Factsheet for Bra018623.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93560	Canola	vacuole	99.43	88.8
CDX95058	Canola	vacuole	92.31	86.63
AT1G08470.1	Thale cress	endoplasmic reticulum, vacuole	90.31	81.28
VIT_06s0009g00850.t01	Wine grape	cytosol	70.94	70.94
Solyc06g073910.2.1	Tomato	cytosol, plasma membrane, vacuole	56.13	64.8
PGSC0003DMT400015199	Potato	vacuole	70.94	63.68
PGSC0003DMT400007732	Potato	vacuole	70.66	63.43
Solyc11g071800.1.1	Tomato	plastid, vacuole	70.37	63.17
GSMUA_Achr3P30810_001	Banana	endoplasmic reticulum, vacuole	68.66	61.95
HORVU5Hr1G114720.1	Barley	plastid	33.33	61.58
Bra002383.1-P	Field mustard	vacuole	66.38	58.99
KRH26734	Soybean	vacuole	60.4	58.08
EER90869	Sorghum	vacuole	65.81	58.04
TraesCS5D01G400000.1	Wheat	golgi	63.82	56.28
TraesCS5A01G390200.1	Wheat	golgi	63.53	56.03
TraesCS5B01G395100.1	Wheat	vacuole	63.53	55.89
HORVU5Hr1G095260.1	Barley	extracellular	62.96	55.39
Os03t0750700-01	Rice	plasma membrane	62.68	55.14
GSMUA_Achr8P04740_001	Banana	endoplasmic reticulum, golgi, vacuole	64.67	54.7
KRH56180	Soybean	endoplasmic reticulum	68.38	54.42
KRH22599	Soybean	vacuole	58.4	53.25
HORVU5Hr1G114800.1	Barley	extracellular	29.91	48.84
Bra007294.1-P	Field mustard	vacuole	48.15	45.19
Zm00001d034032_P001	Maize	plasma membrane	65.24	42.49
Bra000223.1-P	Field mustard	vacuole	43.59	41.46
Bra000222.1-P	Field mustard	cytosol	40.17	40.87
Bra014655.1-P	Field mustard	endoplasmic reticulum, golgi	43.59	40.16
Bra014652.1-P	Field mustard	extracellular, golgi, vacuole	42.17	40.0
Bra007457.1-P	Field mustard	golgi, vacuole	47.01	39.95
Bra014536.1-P	Field mustard	vacuole	47.01	39.86
Bra004614.1-P	Field mustard	vacuole	41.6	39.57
Bra007293.1-P	Field mustard	vacuole	41.03	39.02
Bra003263.1-P	Field mustard	vacuole	41.03	38.92
Bra034344.1-P	Field mustard	vacuole	40.17	38.11
Bra004613.1-P	Field mustard	vacuole	39.6	37.07
Bra008125.1-P	Field mustard	cytosol, peroxisome, vacuole	24.79	37.02
Bra008126.1-P	Field mustard	vacuole	31.34	33.64
Bra008127.1-P	Field mustard	vacuole	31.34	33.54
Bra008124.1-P	Field mustard	vacuole	30.77	33.23
Bra015943.1-P	Field mustard	vacuole	30.48	32.82
HORVU6Hr1G025030.1	Barley	cytosol	10.26	32.43
Bra003820.1-P	Field mustard	vacuole	29.06	31.58
Bra038899.1-P	Field mustard	golgi, vacuole	27.92	26.42
Bra038898.1-P	Field mustard	golgi, vacuole	27.64	24.43
Bra036798.1-P	Field mustard	vacuole	26.78	22.71
Bra015944.1-P	Field mustard	vacuole	30.2	17.76

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	EnsemblPlantsGene:Bra018623	EnsemblPlants:Bra018623.1	EnsemblPlants:Bra018623.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016020	GO:GO:0016844	InterPro:IPR011042	UniProt:M4DQ32	PFAM:PF03088	PANTHER:PTHR10426
PANTHER:PTHR10426:SF24	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	UniParc:UPI000253E792	:

Description

AT1G08470 (E=1e-190) | strictosidine synthase family protein

Coordinates

chrA06:-:2929418..2931808

Molecular Weight (calculated)

39601.3 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.316

Length

351 amino acids

Sequence
(BLAST)

001: MPPLSSLPKE RDHENLLQNS EIRFVNEVQG PESIAFDPLG RGPYTGVADG RILFWDGTRW TDFAYTSNNR SELCDTKSSL LAYLKNEHIC GRPLGLRFHK
101: RTGDLYIADA YFGIMKVGPE GGLATSLTTE ADGVPLRFTN DLDVDEEGNV YFTDSSSVFQ RRNFMHLIVS GEDTGRVLKY NPETKETTTL LRNLQFPNGL
201: SLGRDGSFFI FCEGSIGRLR KYWLKGEKSG TSEVVALLHG FPDNIRTNKD GDFWVAVHCH RNIFTHVMAH HPNVRKFFLK LPITVKFQYL LQVGGWPHAV
301: AVKYSEDGKV LKVLEDKQGK VVKAVSEIEE KDGKLWMGSV LMSFIAVYDL P

Best Arabidopsis Sequence Match ( AT1G08470.1 )
(BLAST)

001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP

Arabidopsis Description

SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.