Factsheet for VIT_11s0016g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 5
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g00880.t01	Wine grape	plastid	81.1	80.43
PGSC0003DMT400005990	Potato	cytosol	52.6	66.44
KRH37504	Soybean	vacuole	61.37	62.57
Solyc05g025810.2.1	Tomato	plasma membrane, vacuole	60.55	62.43
VIT_11s0016g00870.t01	Wine grape	plasma membrane, vacuole	77.53	61.39
KRH37503	Soybean	vacuole	51.78	60.19
GSMUA_Achr11P...	Banana	golgi, vacuole	53.97	54.87
TraesCS2A01G170300.1	Wheat	cytosol	46.3	52.81
TraesCS2B01G196600.1	Wheat	golgi	49.32	49.32
TraesCS2D01G177900.2	Wheat	golgi	48.77	48.77
KXG36676	Sorghum	vacuole	47.4	48.06
KXG36678	Sorghum	vacuole	48.22	47.83
TraesCS2B01G196500.1	Wheat	golgi, vacuole	47.95	47.68
Zm00001d006853_P001	Maize	vacuole	47.4	47.14
Os07t0614000-02	Rice	vacuole	46.85	46.59
TraesCS2D01G177700.1	Wheat	plasma membrane, vacuole	46.85	46.59
TraesCS2A01G170200.1	Wheat	plasma membrane, vacuole	46.85	43.18
VIT_04s0210g00060.t01	Wine grape	cytosol, mitochondrion	27.67	37.55
VIT_04s0210g00120.t01	Wine grape	vacuole	34.52	33.25
VIT_04s0210g00080.t01	Wine grape	vacuole	34.25	32.98
VIT_04s0210g00100.t01	Wine grape	cytosol	15.34	32.0
VIT_04s0210g00130.t01	Wine grape	plasma membrane, vacuole	24.66	31.47
VIT_06s0009g00850.t01	Wine grape	cytosol	29.59	30.77
VIT_04s0210g00050.t01	Wine grape	plastid	34.52	30.22
VIT_04s0210g00090.t01	Wine grape	mitochondrion, vacuole	16.16	30.1
VIT_00s0575g00020.t01	Wine grape	vacuole	25.48	28.88
VIT_10s0042g00050.t01	Wine grape	vacuole	25.48	28.88
VIT_10s0042g00030.t01	Wine grape	vacuole	21.37	28.57
VIT_13s0074g00070.t01	Wine grape	vacuole	21.37	28.47
VIT_10s0042g00010.t01	Wine grape	vacuole	24.38	28.25
VIT_10s0071g00010.t01	Wine grape	vacuole	24.66	27.95
VIT_00s0575g00010.t01	Wine grape	vacuole	23.84	27.88
VIT_13s0074g00080.t01	Wine grape	vacuole	24.38	27.64
VIT_10s0042g00020.t01	Wine grape	vacuole	24.11	27.33
VIT_10s0071g00020.t01	Wine grape	vacuole	23.01	27.18
VIT_10s0071g00250.t01	Wine grape	vacuole	24.93	26.76
VIT_05s0102g00880.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	29.59	26.6
VIT_08s0007g05370.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	26.3	25.95
VIT_08s0007g05360.t01	Wine grape	vacuole	25.48	24.6
VIT_17s0000g04600.t01	Wine grape	vacuole	21.64	23.03
VIT_04s0210g00040.t01	Wine grape	cytosol, peroxisome, vacuole	23.01	22.4
VIT_17s0000g04610.t01	Wine grape	vacuole	21.92	21.8
VIT_17s0000g04580.t01	Wine grape	extracellular, vacuole	10.14	20.44
VIT_17s0000g04590.t01	Wine grape	endoplasmic reticulum, peroxisome, vacuole	21.1	17.0
VIT_04s0210g00030.t01	Wine grape	vacuole	35.07	16.56

Protein Annotations

EntrezGene:100264461	wikigene:100264461	Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	ProteinID:CCB51387
ProteinID:CCB51387.1	UniProt:F6HGS3	EMBL:FN595756	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016788	GO:GO:0016844
InterPro:IPR011042	EntrezGene:LOC100264461	wikigene:LOC100264461	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF35
SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI00019842A4	ArrayExpress:VIT_11s0016g00860
EnsemblPlantsGene:VIT_11s0016g00860	EnsemblPlants:VIT_11s0016g00860.t01	RefSeq:XP_002277770	RefSeq:XP_002277770.1	:	:

Description

No Description!

Coordinates

chr11:-:771978..773764

Molecular Weight (calculated)

39846.0 Da

IEP (calculated)

5.247

GRAVY (calculated)

0.100

Length

365 amino acids

Sequence
(BLAST)

001: MAGNNAFGNL NICMRTSSTV ILACILASAL QIFLFSPISP DLLQLPQPSS AALLTNKKLQ EVAKIGEGLL DKPEDVCFDG EGILYTATRD GWIKRLHRNG
101: SWEDWRLIGG GSLIGVTPTR TGGIIVCDIE KGLLKVGEDG VSILTSHVNG SKIKFANDVI EAADGSVYFS VASTEFVNWY LDVLEAKPHG QLLKYDPLLN
201: ETSILLDNLA FANGVALSQD EDFLVVCETW KFRCLKYWLE GERKGRTETF IDNLPGGPDN VNLAPDGSFW IALIKVTSDG FEFVHTSKAL KHLLATFPKL
301: FQLVKGSHKK ASVVKVAADG KIIDKFDDPN GKVISFVTSA LEFEDYLYLG SLNTNFIGIL PLKAA

Best Arabidopsis Sequence Match ( AT3G51420.1 )
(BLAST)

001: MVLFFSTRFL FFSIFFPCLI SITLYQLDSF EPASLPADSL ITSPTSIPPL LNDRFLTGAE FIGVGLLNNP EDIAYHKDSN LIYTGCVDGW VKRVSVHDSA
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL

Arabidopsis Description

SSL4SSL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VDG6]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.