Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G177700.1 | Wheat | plasma membrane, vacuole | 94.28 | 94.28 |
| TraesCS2A01G170200.1 | Wheat | plasma membrane, vacuole | 94.55 | 87.63 |
| TraesCS2B01G196600.1 | Wheat | golgi | 79.56 | 80.0 |
| Zm00001d006853_P001 | Maize | vacuole | 74.39 | 74.39 |
| KXG36678 | Sorghum | vacuole | 73.3 | 73.1 |
| KXG36676 | Sorghum | vacuole | 70.3 | 71.67 |
| Os07t0614000-02 | Rice | vacuole | 71.66 | 71.66 |
| GSMUA_Achr11P... | Banana | golgi, vacuole | 55.04 | 56.27 |
| PGSC0003DMT400005990 | Potato | cytosol | 40.6 | 51.56 |
| KRH37504 | Soybean | vacuole | 47.14 | 48.32 |
| Solyc05g025810.2.1 | Tomato | plasma membrane, vacuole | 46.59 | 48.31 |
| VIT_11s0016g00860.t01 | Wine grape | golgi, vacuole | 47.68 | 47.95 |
| VIT_11s0016g00880.t01 | Wine grape | plastid | 47.96 | 47.83 |
| KRH37503 | Soybean | vacuole | 35.42 | 41.4 |
| VIT_11s0016g00870.t01 | Wine grape | plasma membrane, vacuole | 47.68 | 37.96 |
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 34.06 | 34.06 |
| TraesCS3B01G559000.1 | Wheat | cytosol | 14.99 | 29.41 |
| TraesCS3B01G558800.1 | Wheat | cytosol | 16.35 | 28.71 |
| TraesCS5B01G395100.1 | Wheat | vacuole | 31.06 | 28.57 |
| TraesCS3B01G338500.1 | Wheat | extracellular, golgi, vacuole | 26.16 | 27.99 |
| TraesCS5B01G382800.1 | Wheat | vacuole | 25.89 | 27.86 |
| TraesCS3B01G289800.1 | Wheat | vacuole | 25.34 | 27.68 |
| TraesCS2B01G092900.1 | Wheat | golgi, vacuole | 25.61 | 27.49 |
| TraesCS5B01G383000.1 | Wheat | vacuole | 25.34 | 27.43 |
| TraesCS7B01G040900.1 | Wheat | golgi, vacuole | 25.34 | 26.72 |
| TraesCS2B01G093000.1 | Wheat | golgi, vacuole | 24.8 | 26.53 |
| TraesCS2B01G281700.1 | Wheat | golgi, vacuole | 24.52 | 26.16 |
| TraesCS5B01G330900.1 | Wheat | extracellular, vacuole | 13.08 | 25.95 |
| TraesCS7B01G040400.1 | Wheat | golgi, vacuole | 24.52 | 25.86 |
| TraesCS5B01G195300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 24.25 | 25.72 |
| TraesCS5B01G133600.1 | Wheat | extracellular, vacuole | 25.61 | 25.13 |
| TraesCS5B01G195400.1 | Wheat | vacuole | 24.52 | 24.73 |
| TraesCS3B01G559100.1 | Wheat | vacuole | 23.16 | 24.64 |
| TraesCS4B01G215300.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion, vacuole | 26.98 | 23.97 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G196500.1 | EnsemblPlantsGene:TraesCS2B01G196500 | Gene3D:2.120.10.30 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016844 | InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | InterPro:Strictosidine_synth_cons-reg |
| InterPro:Strictosidine_synthase | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF35 | PFAM:PF03088 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF63829 | TMHMM:TMhelix | MapMan:50.4.3 | : | : | : |
Description
No Description!
Coordinates
chr2B:-:174592030..174593762
Molecular Weight (calculated)
39204.6 Da
IEP (calculated)
5.054
GRAVY (calculated)
0.056
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGGLFGTA AVAVVVSLAV HVALNCPIQP IPSTRPPAAR YPPNNLLQGL EKLGEGQLSA PEDVYVDAAA GGTVYTATRD GWLQRMHPNG SWEQWRFVGG
101: TGLLGIAPSA DGSVLVCDAD KGLLKVEEGR VTILASTVEG STIRFADEAI EASDGTVYFS DASTRFGFDR WFHAYVEAHP TGRLLKYDPR TGKASVALDN
201: LAFANGVALS KDEAFVIVCE TGRFRCTRLW LKGDKTGQAE TFVDDLPGGP DNIQLAPDGS FWVALIQRSP WLDLVMRWTF TKRVVASFPA LLDAVHATGK
301: GAMVAQVSED GEVLRVLDDT QGKVINFITS VTEHDGYLFF GSLATNFVGK LSLAKVAQAQ GQPAVSS
101: TGLLGIAPSA DGSVLVCDAD KGLLKVEEGR VTILASTVEG STIRFADEAI EASDGTVYFS DASTRFGFDR WFHAYVEAHP TGRLLKYDPR TGKASVALDN
201: LAFANGVALS KDEAFVIVCE TGRFRCTRLW LKGDKTGQAE TFVDDLPGGP DNIQLAPDGS FWVALIQRSP WLDLVMRWTF TKRVVASFPA LLDAVHATGK
301: GAMVAQVSED GEVLRVLDDT QGKVINFITS VTEHDGYLFF GSLATNFVGK LSLAKVAQAQ GQPAVSS
001: MVLFFSTRFL FFSIFFPCLI SITLYQLDSF EPASLPADSL ITSPTSIPPL LNDRFLTGAE FIGVGLLNNP EDIAYHKDSN LIYTGCVDGW VKRVSVHDSA
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
Arabidopsis Description
SSL4SSL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VDG6]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.