Factsheet for Solyc05g009390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037702	Potato	cytosol	95.21	95.21
VIT_01s0011g03620.t01	Wine grape	cytosol, plastid	65.74	62.59
CDY40888	Canola	plastid	58.69	60.99
CDY38348	Canola	plastid	58.69	60.84
CDY40890	Canola	plastid	58.69	60.84
AT1G77420.1	Thale cress	cytosol	57.68	59.95
Bra008307.1-P	Field mustard	cytosol, plastid	57.68	59.95
KRH75362	Soybean	nucleus	58.19	58.63
Os01t0688200-01	Rice	plastid	56.93	58.55
TraesCS3A01G263400.1	Wheat	mitochondrion, plastid	55.42	58.51
HORVU3Hr1G063840.1	Barley	mitochondrion, plastid	55.42	58.51
TraesCS3D01G263200.2	Wheat	mitochondrion	55.16	58.24
GSMUA_Achr3P29490_001	Banana	plastid	55.16	57.94
TraesCS3B01G296600.2	Wheat	plastid	54.66	57.71
KXG33155	Sorghum	plastid	53.4	57.61
GSMUA_Achr4P03690_001	Banana	mitochondrion	54.91	57.07
CDX79202	Canola	cytosol	25.69	56.98
Solyc02g063160.2.1	Tomato	cytosol	48.61	56.43
Zm00001d011619_P002	Maize	plastid	55.67	55.11
Solyc02g086040.1.1	Tomato	cytosol	36.02	50.71
CDX68059	Canola	cytosol	22.67	47.37
Bra003685.1-P	Field mustard	cytosol	22.67	47.37
Solyc02g063200.1.1	Tomato	cytosol	38.04	43.52
Solyc04g010250.2.1	Tomato	cytosol	29.47	36.68
Solyc03g006560.2.1	Tomato	cytosol	26.2	35.37
Solyc09g075140.2.1	Tomato	cytosol	29.97	33.81
Solyc05g056000.2.1	Tomato	cytosol	26.95	31.94
Solyc03g119980.2.1	Tomato	cytosol	25.19	30.58
Solyc02g069930.1.1	Tomato	cytosol	23.43	29.15
Solyc03g098020.2.1	Tomato	plastid	26.7	25.98
Solyc08g066440.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	23.93	23.51

Protein Annotations

Gene3D:3.40.50.1820	MapMan:35.1	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016298	GO:GO:0016787
InterPro:Hydrolase_4	InterPro:IPR029058	UniProt:K4BXB3	PFAM:PF12146	PRINTS:PR00111	PANTHER:PTHR11614
PANTHER:PTHR11614:SF94	SUPFAM:SSF53474	EnsemblPlantsGene:Solyc05g009390.2	EnsemblPlants:Solyc05g009390.2.1	UniParc:UPI0002766A67	SEG:seg

Description

No Description!

Coordinates

chr5:-:3544526..3548741

Molecular Weight (calculated)

44652.1 Da

IEP (calculated)

8.899

GRAVY (calculated)

-0.253

Length

397 amino acids

Sequence
(BLAST)

001: MDLALNSTFR PSIPSESSLF HRKINRPIIH RHIWKWKPQI STSETKGRTI TMALKKAKID GVSEALNEIA SQNLDHAPAR RRVRSAFANV QQQLDHILFK
101: MAPGDIRLEE WYETNSKGQQ IFCKSWLPKP GIRIKGALCF SHGYGDTCTF FFEGIAKHIA AAGYAVYAID HPGFGLSDGL HGYIPEFDGI VDNVNEQYVK
201: IKGRPEVRGL PHFIFGQSMG GAIALKALLK EPHEWDGIVL VAPMCKIAED MTPPVPLQKV LIFLSNIMPQ AKIVPTKDLA ELAIREFKKR KMAPYNVISY
301: SDKTRVKTAV ELLNATKYIE QHVDKVASPM LILHGADDRV TDPRVSQYLY DKSSSSDKTL KLYDGGFHCI LEGEPDDRIL TVLNDIISWL DTRCTPN

Best Arabidopsis Sequence Match ( AT1G77420.1 )
(BLAST)

001: MDRALTPRFD TPATLSPFRY RYGSSLAITR RFAPAIVCAK RSPIDGVSDE LNLIASQNLD QAPARRLARS AFVDLQLQLD HCLFKKAPSG IRTEEWYERN
101: SKGEDIFCKS WLPKSGDEIK AAVCFCHGYG STCTFFFDGI AKQIAGFGYG VYAIDHPGFG LSDGLHGHIP SFDDLADNAI EQFTKMKGRS ELRNLPRFLL
201: GQSMGGAVAL KIHLKEPQAW DGLILVAPMC KISEDVKPPP LVLKTLILMS TLFPKAKLFP KRDLSDFFFR DLSKRKLCEY DVICYDDQTR LKTAVELLNA
301: TRDIEMQVDK VSLPLLILHG DTDKVTDPTV SKFLHKHAVS QDKTLKLYPG GYHCILEGDT DENIFTVIND IVAWLDARVD PK

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FVW6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.