Factsheet for VIT_01s0011g03620.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75362	Soybean	nucleus	64.51	68.27
TraesCS3D01G263200.2	Wheat	mitochondrion	60.19	66.76
TraesCS3A01G263400.1	Wheat	mitochondrion, plastid	59.95	66.49
HORVU3Hr1G063840.1	Barley	mitochondrion, plastid	59.71	66.22
TraesCS3B01G296600.2	Wheat	plastid	59.47	65.96
PGSC0003DMT400037702	Potato	cytosol	62.59	65.74
Solyc05g009390.2.1	Tomato	plastid	62.59	65.74
CDX79202	Canola	cytosol	28.06	65.36
Os01t0688200-01	Rice	plastid	60.43	65.28
CDY40888	Canola	plastid	59.47	64.92
CDY38348	Canola	plastid	59.47	64.75
CDY40890	Canola	plastid	59.47	64.75
GSMUA_Achr3P29490_001	Banana	plastid	58.27	64.29
Bra008307.1-P	Field mustard	cytosol, plastid	58.51	63.87
KXG33155	Sorghum	plastid	56.35	63.86
GSMUA_Achr4P03690_001	Banana	mitochondrion	58.27	63.61
AT1G77420.1	Thale cress	cytosol	57.79	63.09
Zm00001d011619_P002	Maize	plastid	58.99	61.35
VIT_14s0006g02900.t01	Wine grape	plastid	49.88	54.03
CDX68059	Canola	cytosol	24.46	53.68
Bra003685.1-P	Field mustard	cytosol	24.46	53.68
VIT_00s0317g00110.t01	Wine grape	cytosol	29.26	38.24
VIT_07s0005g00510.t01	Wine grape	cytosol	30.46	36.39
VIT_10s0116g00730.t01	Wine grape	cytosol	26.62	35.35
VIT_09s0002g05730.t01	Wine grape	cytosol	24.46	31.78
VIT_13s0019g04260.t01	Wine grape	cytosol	24.46	31.0
VIT_10s0003g04950.t01	Wine grape	cytosol	21.82	27.74
VIT_17s0000g01010.t01	Wine grape	plastid	25.66	26.75
VIT_04s0008g03220.t01	Wine grape	cytosol	24.46	25.56
VIT_17s0000g01070.t01	Wine grape	plastid	24.46	25.56

Protein Annotations

EntrezGene:100255956	wikigene:100255956	Gene3D:3.40.50.1820	MapMan:35.1	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1
EMBL:AM460460	ProteinID:CAN76925	ProteinID:CAN76925.1	ProteinID:CBI27011	ProteinID:CBI27011.3	UniProt:D7T940
EMBL:FN595752	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016298	GO:GO:0016787	InterPro:Hydrolase_4	InterPro:IPR029058
EntrezGene:LOC100255956	wikigene:LOC100255956	PFAM:PF12146	PRINTS:PR00111	PANTHER:PTHR11614	PANTHER:PTHR11614:SF94
SUPFAM:SSF53474	TIGR:TC59635	UniParc:UPI00015C7F3F	ArrayExpress:VIT_01s0011g03620	EnsemblPlantsGene:VIT_01s0011g03620	EnsemblPlants:VIT_01s0011g03620.t01
unigene:Vvi.17779	RefSeq:XP_002282702	RefSeq:XP_002282702.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:3271099..3277964

Molecular Weight (calculated)

46485.5 Da

IEP (calculated)

8.735

GRAVY (calculated)

-0.164

Length

417 amino acids

Sequence
(BLAST)

001: MELSMSSRFR SSELHLFCRA LGTPLKVRPY HHLPIILRPK LKPTPIVSVP KTRVLITAKK RSSIEGVSEE MNAIASQSLD SASARRRVRS AFLDVQQQLD
101: HCLFKIAPTG IRTEEWYEKN SRGLEIFSKC WLPKPGIRTK GSLCFCHGYG DTCTFFFEGI AKQIAASGYA VYALDYPGFG LSDGLHGYIS SFDELVDDVI
201: DHYTKIKGRP ELRGLPHFIL GQSMGGAVTL KAHLKEPSGW DGVILVAPMC KIAEDVTPPP AVLKVLTLLS KAMPKAKLFP QKDLAELAFR DSRKRKMAAY
301: NVISYNDQMR LRTAVELLEA TSDIEMQLEK VSSPLLILHG AADKVTDPLV SQFLYEKASS KDKTLKLYEE GYHCILEGEP DDRIFTVLRD IIAWLDSHCS
401: LNRGSLNIKV PSSGGEN

Best Arabidopsis Sequence Match ( AT1G77420.1 )
(BLAST)

001: MDRALTPRFD TPATLSPFRY RYGSSLAITR RFAPAIVCAK RSPIDGVSDE LNLIASQNLD QAPARRLARS AFVDLQLQLD HCLFKKAPSG IRTEEWYERN
101: SKGEDIFCKS WLPKSGDEIK AAVCFCHGYG STCTFFFDGI AKQIAGFGYG VYAIDHPGFG LSDGLHGHIP SFDDLADNAI EQFTKMKGRS ELRNLPRFLL
201: GQSMGGAVAL KIHLKEPQAW DGLILVAPMC KISEDVKPPP LVLKTLILMS TLFPKAKLFP KRDLSDFFFR DLSKRKLCEY DVICYDDQTR LKTAVELLNA
301: TRDIEMQVDK VSLPLLILHG DTDKVTDPTV SKFLHKHAVS QDKTLKLYPG GYHCILEGDT DENIFTVIND IVAWLDARVD PK

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FVW6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.