Factsheet for VIT_13s0019g04260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34878	Soybean	cytosol	78.12	79.08
Solyc05g056000.2.1	Tomato	cytosol	73.86	72.54
PGSC0003DMT400060321	Potato	cytosol	72.95	71.64
GSMUA_Achr1P08950_001	Banana	peroxisome	69.6	69.18
Bra020032.1-P	Field mustard	cytosol	70.21	68.96
CDY44908	Canola	cytosol	70.21	68.96
CDY69863	Canola	cytosol	69.91	68.66
AT5G19290.1	Thale cress	cytoskeleton, cytosol, plastid	68.09	67.88
CDY13986	Canola	cytosol	69.0	67.76
Bra002224.1-P	Field mustard	cytosol	69.0	67.76
CDX92543	Canola	cytosol	69.0	66.96
AT5G14980.1	Thale cress	plastid	66.26	66.67
Zm00001d040681_P001	Maize	cytosol, mitochondrion	66.26	66.46
TraesCS4B01G051000.1	Wheat	cytosol	65.65	66.26
CDX85571	Canola	plastid	65.65	65.85
TraesCS4D01G051100.1	Wheat	cytosol, golgi	64.44	65.23
TraesCS4A01G263500.1	Wheat	cytosol	64.13	64.92
Os01t0317800-01	Rice	plasma membrane	64.13	64.13
EES00674	Sorghum	cytosol	63.53	63.33
VIT_10s0003g04950.t01	Wine grape	cytosol	52.89	53.05
VIT_10s0116g00730.t01	Wine grape	cytosol	37.39	39.17
VIT_00s0317g00110.t01	Wine grape	cytosol	35.26	36.36
VIT_07s0005g00510.t01	Wine grape	cytosol	34.95	32.95
VIT_09s0002g05730.t01	Wine grape	cytosol	31.0	31.78
VIT_14s0006g02900.t01	Wine grape	plastid	32.22	27.53
VIT_01s0011g03620.t01	Wine grape	cytosol, plastid	31.0	24.46
VIT_17s0000g01010.t01	Wine grape	plastid	25.84	21.25
VIT_17s0000g01070.t01	Wine grape	plastid	25.53	21.05
VIT_04s0008g03220.t01	Wine grape	cytosol	24.01	19.8

Protein Annotations

EntrezGene:100261504	wikigene:100261504	Gene3D:3.40.50.1820	MapMan:35.1	InterPro:AB_hydrolase	ProteinID:CCB56187
ProteinID:CCB56187.1	UniProt:F6HNG8	EMBL:FN595998	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016298	GO:GO:0016787
InterPro:Hydrolase_4	InterPro:IPR029058	EntrezGene:LOC100261504	wikigene:LOC100261504	PFAM:PF12146	PANTHER:PTHR11614
PANTHER:PTHR11614:SF101	SUPFAM:SSF53474	TIGR:TC67981	UniParc:UPI00015C9C50	ArrayExpress:VIT_13s0019g04260	EnsemblPlantsGene:VIT_13s0019g04260
EnsemblPlants:VIT_13s0019g04260.t01	unigene:Vvi.12311	RefSeq:XP_002274887	RefSeq:XP_002274887.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:-:5579975..5581116

Molecular Weight (calculated)

36149.3 Da

IEP (calculated)

6.949

GRAVY (calculated)

-0.041

Length

329 amino acids

Sequence
(BLAST)

001: MVHPVAEANE QSPFGSLSPS EFYARHSVTH SSEYITNSRG MKLFTQSWTP LPPTKIIGTL AVVHGFTGES SWFLQLTAVH FTKAGFATCA IDHQGHGFSD
101: GLVAHIPDIN PVVDDCIAFF DSFRARHAPS LPSFLYSESL GGAIALLITL RRGPSRPWDG LVLNGAMCGI SPKFKPPWPL EHFLFLLAAV VPTWRVVPTR
201: GALPQLSFKV EWKRNLALAS PRRPVARPRA ATAQELLRVC REIQNRYGEM EVPFLVVHGA DDVVCDPACV EELYRRAPSK DKTLKIYPDM IHQLVGEPDE
301: NVELVFGDIV EWLRTRAESA AAGGGDGGA

Best Arabidopsis Sequence Match ( AT5G19290.1 )
(BLAST)

001: MGLHPISDAN EHNPFGSLTA DEFYAKHSVS HSSAFITNPR GLKLFTQWWS PLPPTKPIGI IAVVHGFTGE SSWFLQLTSI LFAKSGFITC AIDHQGHGFS
101: DGLIAHIPDI NPVVDDCISF FDDFRSRQTP SDLPCFLYSE SLGGAIALYI SLRQRGVWDG LILNGAMCGI SDKFKPPWPL EHLLFVVANL IPTWRVIPTR
201: GSIPDVSFKE PWKRKLAMAS PRRTVAKPRA ATAYELIRVC KDLQGRFEEV EVPLLIVHGG GDVVCDVACV EELHRRAISE DKTIKIYPEL WHQMIGESEE
301: KVDLVYGDML SWLKSRAERK ARAAVDGGAA

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZV6]
SUBAcon: [plastid,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.