CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35942	Soybean	plastid	69.54	71.54
KRG90831	Soybean	plastid	71.83	71.46
VIT_01s0011g03620.t01	Wine grape	cytosol, plastid	68.27	64.51
CDY40888	Canola	plastid	60.15	62.04
AT1G77420.1	Thale cress	cytosol	59.64	61.52
Bra008307.1-P	Field mustard	cytosol, plastid	59.64	61.52
CDY40890	Canola	plastid	59.64	61.36
CDY38348	Canola	plastid	59.64	61.36
CDX79202	Canola	cytosol	27.41	60.34
GSMUA_Achr3P29490_001	Banana	plastid	57.36	59.79
TraesCS3D01G263200.2	Wheat	mitochondrion	56.85	59.57
HORVU3Hr1G063840.1	Barley	mitochondrion, plastid	56.85	59.57
TraesCS3A01G263400.1	Wheat	mitochondrion, plastid	56.6	59.31
TraesCS3B01G296600.2	Wheat	plastid	56.35	59.04
PGSC0003DMT400037702	Potato	cytosol	59.14	58.69
Solyc05g009390.2.1	Tomato	plastid	58.63	58.19
KXG33155	Sorghum	plastid	54.31	58.15
GSMUA_Achr4P03690_001	Banana	mitochondrion	56.35	58.12
KRH18244	Soybean	cytosol	50.76	57.97
Os01t0688200-01	Rice	plastid	56.6	57.77
Zm00001d011619_P002	Maize	plastid	56.09	55.11
KRG93887	Soybean	cytosol	26.14	51.76
KRH39183	Soybean	cytosol	46.19	51.41
Bra003685.1-P	Field mustard	cytosol	23.1	47.89
CDX68059	Canola	cytosol	23.1	47.89
KRH48488	Soybean	cytosol	26.65	47.09
KRH69290	Soybean	cytosol	30.96	39.23
KRG92965	Soybean	cytosol	32.23	38.84
KRH68197	Soybean	cytosol	32.99	37.36
KRH36216	Soybean	nucleus	32.74	37.18
KRH20516	Soybean	cytosol	27.92	33.95
KRH60583	Soybean	peroxisome	23.1	32.04
KRH02768	Soybean	cytosol	23.1	31.71
KRH19112	Soybean	cytosol	25.63	30.98
KRH39013	Soybean	cytosol, mitochondrion, peroxisome, plastid	13.45	30.29
KRH34878	Soybean	cytosol	24.62	29.85
KRH48707	Soybean	endoplasmic reticulum, golgi	26.65	27.78
KRH41883	Soybean	endoplasmic reticulum, golgi	25.13	27.5
KRH62086	Soybean	plastid	25.63	26.72
KRH52771	Soybean	cytosol, endoplasmic reticulum, peroxisome	24.37	26.3

Protein Annotations

EntrezGene:100807463	Gene3D:3.40.50.1820	MapMan:35.1	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	EMBL:ACUP02000336
EnsemblPlantsGene:GLYMA_01G080600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016298	GO:GO:0016787	InterPro:Hydrolase_4	UniProt:I1J6J7
InterPro:IPR029058	EnsemblPlants:KRH75362	ProteinID:KRH75362	ProteinID:KRH75362.1	PFAM:PF12146	PRINTS:PR00111
PANTHER:PTHR11614	PANTHER:PTHR11614:SF94	SUPFAM:SSF53474	UniParc:UPI00023370B2	:	:

Description

hypothetical protein

Coordinates

chr1:+:22689191..22695321

Molecular Weight (calculated)

44752.4 Da

IEP (calculated)

8.779

GRAVY (calculated)

-0.190

Length

394 amino acids

Sequence
(BLAST)

001: MELSVPFRFR SRNLLSPSTH IPITYPSKHQ PPFLTKFVNK PKISKLTVRA QRRAPIEGLS DELNAIARCN LDFAYTRRRV RAAFADMQQQ LDHCLFKNAP
101: AGIRTEEWYE RNSRGLEIFC KSWMPKPGIP IKASVCFCHG YGDTCTFFFE GIARIIAASG YSVFAMDYPG FGLSEGLHGY IPKFDYLVDD VIEHYTKIKA
201: RPDLSGLPRF ILGQSMGGAV SLKVHLREPN NWDGMILVAP MCKIAEDVLP SDAVLKVLTL LSKVMPKAKL IQNQDIADLF FREPSKRKLA VYNVICYDDN
301: PRLRTGMELL RTTKEIESQV HKVSAPLLIL HGAEDKVTDP LVSKFLYERA SSKDKTLKLY EGGYHCILEG EPDDRIFAVH DDIVSWLDFR CSIK

Best Arabidopsis Sequence Match ( AT1G77420.1 )
(BLAST)

001: MDRALTPRFD TPATLSPFRY RYGSSLAITR RFAPAIVCAK RSPIDGVSDE LNLIASQNLD QAPARRLARS AFVDLQLQLD HCLFKKAPSG IRTEEWYERN
101: SKGEDIFCKS WLPKSGDEIK AAVCFCHGYG STCTFFFDGI AKQIAGFGYG VYAIDHPGFG LSDGLHGHIP SFDDLADNAI EQFTKMKGRS ELRNLPRFLL
201: GQSMGGAVAL KIHLKEPQAW DGLILVAPMC KISEDVKPPP LVLKTLILMS TLFPKAKLFP KRDLSDFFFR DLSKRKLCEY DVICYDDQTR LKTAVELLNA
301: TRDIEMQVDK VSLPLLILHG DTDKVTDPTV SKFLHKHAVS QDKTLKLYPG GYHCILEGDT DENIFTVIND IVAWLDARVD PK

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FVW6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.