Factsheet for Solyc05g039950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
peroxisome 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 22364583
extracellular: 22892874

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036505	Potato	plastid	86.08	79.07
PGSC0003DMT400038710	Potato	plastid	86.08	77.27
Solyc08g014490.1.1	Tomato	mitochondrion	43.8	39.68
Solyc08g075180.1.1	Tomato	cytosol	24.81	37.26
Solyc02g081800.1.1	Tomato	cytosol, plastid	39.75	36.43
Solyc02g081760.1.1	Tomato	plastid	39.24	35.39
Solyc02g081740.1.1	Tomato	plastid	38.99	35.24
Solyc08g075210.1.1	Tomato	plastid	36.2	33.73
Solyc02g081750.1.1	Tomato	plastid	38.99	32.63
Solyc07g043710.2.1	Tomato	plastid	35.44	32.11
Solyc07g043700.1.1	Tomato	plastid	34.68	31.93
Solyc11g067270.1.1	Tomato	mitochondrion	33.67	30.93
Solyc11g067330.1.1	Tomato	plastid	33.42	30.48
Solyc07g043670.1.1	Tomato	mitochondrion, plastid	33.16	30.39
Solyc04g012020.1.1	Tomato	mitochondrion, plastid	33.92	30.04
Solyc11g067340.1.1	Tomato	plastid	32.66	29.79
Solyc10g079570.1.1	Tomato	cytosol	25.06	29.64
Solyc04g009680.1.1	Tomato	cytosol, mitochondrion	16.46	29.55
Solyc11g069680.1.1	Tomato	nucleus	35.44	29.54
Solyc11g067290.1.1	Tomato	plastid	31.9	29.51
KRH58729	Soybean	plastid, vacuole	26.84	28.27
Solyc11g067350.1.1	Tomato	plastid	13.16	27.37
VIT_01s0010g02330.t01	Wine grape	cytosol	26.33	26.13
Solyc05g050760.1.1	Tomato	cytosol	10.38	25.47
Solyc12g006330.1.1	Tomato	mitochondrion, plastid	27.34	25.35
KRH42621	Soybean	cytosol, golgi, plastid	29.62	24.53
Solyc04g082350.1.1	Tomato	mitochondrion	28.35	24.03
Solyc08g075200.1.1	Tomato	plastid	7.34	23.2
Solyc05g014330.1.1	Tomato	extracellular	25.06	22.97
Solyc01g105580.1.1	Tomato	cytosol	24.56	22.05
Solyc12g096770.1.1	Tomato	cytosol	23.04	20.63
Solyc01g105590.2.1	Tomato	cytosol	23.54	20.58
Solyc01g105550.1.1	Tomato	cytosol	23.54	20.58
Solyc12g088170.1.1	Tomato	cytosol, peroxisome, plastid	23.54	20.48
Solyc12g096790.1.1	Tomato	cytosol	23.04	20.31
Solyc06g051320.2.1	Tomato	cytosol, plastid	22.53	20.27
Solyc07g006680.1.1	Tomato	cytosol	23.04	20.13
Solyc01g008300.1.1	Tomato	cytosol	13.92	20.07
Solyc12g096800.1.1	Tomato	cytosol	23.29	20.04
Solyc07g008380.1.1	Tomato	cytosol	22.53	20.0
Solyc07g006670.1.1	Tomato	cytosol	22.53	19.31
Solyc12g010980.1.1	Tomato	cytosol	21.52	19.1
Solyc02g081770.1.1	Tomato	cytosol	21.01	18.65
Solyc12g005430.1.1	Tomato	cytosol, nucleus, peroxisome	21.27	18.38
Solyc07g008390.1.1	Tomato	extracellular, mitochondrion	21.77	18.34
Solyc12g005440.1.1	Tomato	cytosol, golgi, peroxisome	20.25	18.22
Solyc07g052060.2.1	Tomato	cytosol	11.14	16.3
Solyc06g071940.1.1	Tomato	cytosol	7.09	15.73

Protein Annotations

EnsemblPlants:Solyc05g039950.1.1	EnsemblPlantsGene:Solyc05g039950.1	Gene3D:3.30.559.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31623	PANTHER:PTHR31623:SF6
PFAM:PF02458	SEG:seg	UniParc:UPI00027660D4	UniProt:K4C076	MapMan:50.2.3	:

Description

No Description!

Coordinates

chr5:-:48333755..48335961

Molecular Weight (calculated)

43813.7 Da

IEP (calculated)

5.869

GRAVY (calculated)

-0.024

Length

395 amino acids

Sequence
(BLAST)

001: MLDFSWITSP AATELEMIVL DWLTKALKLL DEFLQQIYKS GKGRLKDNTT VDCNDAGAEF IQVQIDCLIS ETLNWHNTAI EDLLFPQGLP WSNCASRGLV
101: VVQLTYFNCG GIAISMCISH KIGDGCSGYN LFRDWSHITS HPNNFSIPSL HYVEQSVFPP PSSGPFLSPL FMSNKHDCVQ RRYIFSNQKL LNLKNTVASE
201: SEVQNPTRTE VVSALIFKCA VRAAKANSGI FLPSSMVQAV DLRAQVGLPP NAIGNLLTIC PTSIITNNEE SMTISKLVSE MRKSKELVYK RDNVNDNMFV
301: ALLLELAKSK REYHDNGPNA YQITSLVKFA LHEIDFGWGK PTKVSIANGL NNKLAILMGN QTGGIDAFVT LTEQDMSVLQ YDTELLEFAS LVPSC

Best Arabidopsis Sequence Match ( AT1G24420.1 )
(BLAST)

001: MEKNVEILSR EIVKPSSPTP DDKRILNLSL LDILSSPMYT GALLFYAADP QNLLGFSTEE TSLKLKKSLS KTLPIFYPLA GRIIGSFVEC NDEGAVFIEA
101: RVDHLLSEFL KCPVPESLEL LIPVEAKSRE AVTWPVLLIQ ANFFSCGGLV ITICVSHKIT DATSLAMFIR GWAESSRGLG ITLIPSFTAS EVFPKPLDEL
201: PSKPMDRKEE VEEMSCVTKR FVFDASKIKK LRAKASRNLV KNPTRVEAVT ALFWRCVTKV SRLSSLTPRT SVLQILVNLR GKVDSLCENT IGNMLSLMIL
301: KNEEAAIERI QDVVDEIRRA KEIFSLNCKE MSKSSSRIFE LLEEIGKVYG RGNEMDLWMS NSWCKLGLYD ADFGWGKPVW VTGRGTSHFK NLMLLIDTKD
401: GEGIEAWITL TEEQMSLFEC DQELLESASL NPPVLI

Arabidopsis Description

F21J9.8 [Source:UniProtKB/TrEMBL;Acc:Q9FYM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.