Factsheet for TraesCS1A01G409400.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 2
mitochondrion 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G089930.4	Barley	cytosol	81.78	62.06
TraesCS5B01G019300.1	Wheat	cytosol	70.09	61.48
TraesCS1B01G438300.1	Wheat	cytosol	82.71	57.1
TraesCS1D01G416300.1	Wheat	cytosol	55.14	35.01
TraesCS4A01G314300.1	Wheat	cytosol	40.65	22.96
TraesCS7A01G553700.1	Wheat	cytosol	52.34	22.4
TraesCS6A01G414200.1	Wheat	cytosol	38.32	14.94
TraesCS4A01G389600.1	Wheat	cytosol	39.25	12.84
TraesCS1A01G003100.1	Wheat	cytosol	44.39	12.09
TraesCS4A01G327300.1	Wheat	cytosol	42.52	11.71
TraesCS5A01G087400.1	Wheat	cytosol	42.06	11.06
TraesCS7A01G553600.1	Wheat	nucleus	41.12	10.13
TraesCS5A01G380700.1	Wheat	cytosol, nucleus, peroxisome	43.46	9.87
TraesCS7A01G419800.1	Wheat	cytosol, endoplasmic reticulum	42.52	9.87
TraesCS1A01G035900.1	Wheat	endoplasmic reticulum, extracellular	42.52	9.83
TraesCS4A01G314400.1	Wheat	cytosol	42.52	9.74
TraesCS6A01G389000.1	Wheat	peroxisome	41.12	9.3
Os11t0265900-02	Rice	cytosol	39.25	9.09
TraesCS6A01G403400.1	Wheat	cytosol	39.72	9.08
TraesCS6A01G414400.1	Wheat	cytosol	38.32	8.94
TraesCS7A01G499600.1	Wheat	cytosol	39.72	8.94
TraesCS6A01G414000.1	Wheat	cytosol	39.25	8.94
TraesCS6A01G403300.1	Wheat	cytosol	38.78	8.91
TraesCS6A01G414300.1	Wheat	cytosol	37.38	8.73
TraesCS7A01G416600.1	Wheat	cytosol	29.91	7.17
TraesCS6A01G403000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	32.24	6.68
TraesCS5A01G073300.1	Wheat	cytosol	14.49	4.03
HORVU1Hr1G089890.3	Barley	cytosol	2.34	0.82
TraesCS6A01G414100.1	Wheat	cytosol	0.0	0.0
TraesCS5A01G087600.1	Wheat	cytosol	0.0	0.0
TraesCS4A01G389700.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G416200.1	Wheat	cytosol	0.0	0.0
TraesCS1A01G322200.1	Wheat	cytosol, nucleus, peroxisome	0.0	0.0
TraesCS1B01G438200.1	Wheat	cytosol	0.0	0.0
TraesCS1A01G409300.1	Wheat	cytosol	0.0	0.0
TraesCS1A01G409200.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1A01G409400.1	EnsemblPlantsGene:TraesCS1A01G409400	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase	InterPro:RX-like_CC	ncoils:Coil	PANTHER:PTHR43889
PANTHER:PTHR43889:SF46	PFAM:PF00931	SEG:seg	SUPFAM:SSF52540	TIGR:cd14798	MapMan:35.1

Description

No Description!

Coordinates

chr1A:-:570879879..570880721

Molecular Weight (calculated)

24524.2 Da

IEP (calculated)

8.796

GRAVY (calculated)

-0.329

Length

214 amino acids

Sequence
(BLAST)

001: MVGVSAGTGA MGSLLAKLTA LLSDEYKLLK CVRKEIEFLK RELERMRILL ERLADMEGRL DGLARGWRDS VRDLSYDMED CIDRFMDRLG SGDAKPKFMK
101: RTARRLKTLW ARHDIATQIK ELMARVMEES ERRDRYKLDE SCYSLTKRVE IDPRITSLHE EVKDLVAVDG RVKQVTALLM DESMELKMLP IVGSGGLGKT
201: TLAMEVYRKI GVDF

Best Arabidopsis Sequence Match ( AT5G43470.1 )
(BLAST)

001: MAEAFVSFGL EKLWDLLSRE SERLQGIDGQ LDGLKRQLRS LQSLLKDADA KKHGSDRVRN FLEDVKDLVF DAEDIIESYV LNKLSGKGKG VKKHVRRLAC
101: FLTDRHKVAS DIEGITKRIS EVIGEMQSFG IQQIIDGGRS LSLQERQRVQ REIRQTYPDS SESDLVGVEQ SVKELVGHLV ENDVHQVVSI AGMGGIGKTT
201: LARQVFHHDL VRRHFDGFAW VCVSQQFTQK HVWQRILQEL QPHDGDILQM DEYALQRKLF QLLEAGRYLV VLDDVWKKED WDVIKAVFPR KRGWKMLLTS
301: RNEGVGIHAD PTCLTFRASI LNPEESWKLC ERIVFPRRDE TEVRLDEEME AMGKEMVTHC GGLPLAVKAL GGLLANKHTV PEWKRVFDNI GSQIVGGSWL
401: DDNSLNSVYR ILSLSYEDLP THLKHCFLNL AHFPEDSEIS TYSLFYYWAA EGIYDGSTIE DSGEYYLEEL VRRNLVIADD NYLSWQSKYC QMHDMMREVC
501: LSKAKEENFL QIIIDPTCTS TINAQSPSRS RRLSIHSGKA FHILGHKNKT KVRSLIVPRF EEDYWIRSAS VFHNLTLLRV LDLSWVKFEG GKLPCSIGGL
601: IHLRYLSLYE AKVSHLPSTM RNLKLLLYLN LRVDTEEPIH VPNVLKEMIQ LRYLSLPLKM DDKTKLELGD LVNLEYLYGF STQHSSVTDL LRMTKLRYLA
701: VSLSERCNFE TLSSSLRELR NLETLNFLFS LETYMVDYMG EFVLDHFIHL KQLGLAVRMS KIPDQHQFPP HLVHLFLIYC GMEEDPMPIL EKLLHLKSVR
801: LARKAFLGSR MVCSKGGFPQ LCVIEISKES ELEEWIVEEG SMPCLRTLTI DDCKKLKELP DGLKYITSLK ELKIEGMKRE WKEKLVPGGE DYYKVQHIPD
901: VQFINCDQ

Arabidopsis Description

RPP8Disease resistance protein RPP8 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.