Factsheet for TraesCS5B01G342100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, golgi, plasma membrane
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G342900.1	Wheat	golgi, peroxisome, plasma membrane	96.53	96.19
TraesCS5D01G347600.1	Wheat	cytosol, golgi, plasma membrane	95.49	95.49
TraesCS7B01G476700.1	Wheat	cytosol, golgi, plasma membrane	92.36	91.41
HORVU5Hr1G085710.3	Barley	cytosol, peroxisome, plasma membrane	94.44	81.68
Zm00001d037733_P001	Maize	plasma membrane	79.51	80.63
OQU77604	Sorghum	plasma membrane	77.78	79.15
Os05t0205050-00	Rice	cytosol, peroxisome, plastid	55.21	73.61
TraesCS7B01G122600.2	Wheat	plasma membrane	67.71	70.14
Os05t0205000-01	Rice	cytosol	21.18	69.32
TraesCS3B01G156700.1	Wheat	plasma membrane	61.11	65.67
TraesCS7B01G272700.1	Wheat	plasma membrane	51.74	53.41
TraesCS3B01G368100.1	Wheat	plasma membrane	37.15	43.32
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	36.11	41.27
TraesCS1B01G202700.1	Wheat	plastid	42.36	40.94
TraesCS6B01G335900.1	Wheat	golgi, peroxisome, plasma membrane	39.93	38.98
TraesCS7B01G092900.1	Wheat	endoplasmic reticulum, golgi, peroxisome	39.58	38.0
TraesCS6B01G105300.1	Wheat	golgi, plasma membrane, vacuole	34.03	34.75
TraesCS7B01G204200.1	Wheat	plasma membrane, plastid, vacuole	33.33	34.66

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF189	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5B01G342100
EnsemblPlants:TraesCS5B01G342100.1	TIGR:cd00333	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:+:526642601..526646027

Molecular Weight (calculated)

29933.3 Da

IEP (calculated)

7.111

GRAVY (calculated)

0.458

Length

288 amino acids

Sequence
(BLAST)

001: MAGGEHGANG LQEHDHAGAL EEGRGGGANQ PAGCEDAEQA LSSTGNQPMI SVQFVQKVLA EILGTYLLIF AGCAAVAVNQ RTAGTVTFPG VCITWGLAVM
101: VMVYSVGHIS GAHLNPAVTL AFATCGRFPW RQVPAYAAAQ VVGSTLASLT LRLLFGGEPE HFFGTVPSGS DVQSLVLEFI ITFYLMFVIS GVATDNRAIG
201: ELAGLAVGAT VLLNVLFAGP ISGASMNPAR TIGPAMVAGR YTGIWVYIVG PVSGAVAGAW AYNLIRFTNK PLREITRTGS FLRSARMS

Best Arabidopsis Sequence Match ( AT4G18910.1 )
(BLAST)

001: MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR

Arabidopsis Description

NIP1-2Aquaporin NIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFP7]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.