Factsheet for TraesCS6D01G308900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

nucleus 1
mitochondrion 1
golgi 4
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G330000.1	Wheat	extracellular, golgi, plastid, vacuole	48.76	98.12
TraesCS6B01G360800.1	Wheat	extracellular, golgi, plasma membrane	93.17	76.34
TraesCS6D01G309000.1	Wheat	extracellular, golgi, plasma membrane	87.27	75.34
HORVU6Hr1G080270.3	Barley	plasma membrane	91.61	74.31
TraesCS6D01G308700.1	Wheat	plasma membrane	79.81	67.1
TraesCS6D01G308600.1	Wheat	plasma membrane	80.43	65.9
TraesCS6D01G308500.1	Wheat	plasma membrane	79.19	65.89
TraesCS6D01G308800.1	Wheat	golgi	79.5	64.0
Zm00001d018195_P001	Maize	plasma membrane	75.78	61.93
EES07591	Sorghum	golgi, plasma membrane	72.98	61.04
Os02t0768300-01	Rice	golgi, plasma membrane	69.57	58.33
TraesCS7D01G170200.1	Wheat	golgi	62.42	51.15
TraesCS7D01G476400.1	Wheat	plasma membrane	50.93	44.93
GSMUA_Achr7P13070_001	Banana	golgi, plasma membrane, vacuole	51.86	44.77
TraesCS3D01G325400.1	Wheat	golgi, plasma membrane, vacuole	45.34	37.73
TraesCS1D01G309800.1	Wheat	plasma membrane	45.03	37.28
TraesCS1D01G256100.1	Wheat	golgi, peroxisome, plasma membrane	43.48	34.48
TraesCS4D01G313000.1	Wheat	mitochondrion, plasma membrane	31.68	26.63
TraesCS3D01G003600.1	Wheat	golgi, plasma membrane, vacuole	31.68	26.29
TraesCS3D01G027300.1	Wheat	plasma membrane	28.57	24.66
TraesCS7D01G280200.1	Wheat	plasma membrane	25.47	23.84
TraesCS6D01G251700.1	Wheat	plasma membrane	23.29	18.99
TraesCS7D01G403100.2	Wheat	plasma membrane	23.29	18.8

Protein Annotations

EnsemblPlants:TraesCS6D01G308900.1	EnsemblPlantsGene:TraesCS6D01G308900	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:EamA_dom	InterPro:WAT1-related
PANTHER:PTHR31218	PANTHER:PTHR31218:SF21	PFAM:PF00892	SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix
MapMan:24.2.1.5	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:419657315..419658473

Molecular Weight (calculated)

34424.4 Da

IEP (calculated)

8.371

GRAVY (calculated)

0.478

Length

322 amino acids

Sequence
(BLAST)

001: MTITIFIKVM GLAFLEPVMD QNLYFMGAKL TSAGFATALV NILPAVTFVL ALILRMEKVR LRSLHCQAKN AGTVLTVAGA VLMVLYHGPV MQFPWTKGQH
101: HSTAGGQGAG GARDWLNGTI MVIIACVAWA CFFILQSNTL RSYPAELSLT VLICSMGSLM SGAIALVAER GNTQAWVIGF DTRLFTAVYA GIVCSGVAYY
201: VQGIVSRQRG PVFVTAFNPL CMIITAVMGS IILKEEINLG SVIGAAIIVG GLYFLIWGKS KDEINKVSDV SVKGAGELPL TSVTNDHGHG KQHELGNSNG
301: SHVLDVKTPT TNGHYEIDRS SE

Best Arabidopsis Sequence Match ( AT1G21890.1 )
(BLAST)

001: MGRGLMNSLK PYLAMISMQF GYAGMYIITM VSLKHGMNHY VLAVYRHAIA TAVIAPFALF HERKIRPKMT FRIFLQIALL GFIEPVLDQN LYYVGMTYTS
101: ATFASATANV LPAITFVLAI IFRLESVNFK KVRSIAKVVG TVITVSGALL MTLYKGPIVD FIRFGGGGGG GSDGAGGSHG GAGAAAMDKH WIPGTLMLLG
201: RTFGWAGFFI LQSFTLKQYP AELSLTTLIC LMGTLEGTAV SLVTVRDLSA WKIGFDSNLF AAAYSGVICS GVAYYVQGVV MRERGPVFVA TFNPLCVVIT
301: AALGVVVLSE SIHLGSVIGT LFIIVGLYTV VWGKGKDKRM TDDDEDCKGL PIKSPVKPVD TGKGLAAELE MKSKEGQEAK ATTTTQVEI

Arabidopsis Description

WAT1-related protein At1g21890 [Source:UniProtKB/Swiss-Prot;Acc:F4HZQ7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.