Factsheet for VIT_04s0044g00420.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g00360.t01	Wine grape	plasma membrane	77.38	94.06
VIT_04s0044g00380.t01	Wine grape	plasma membrane	92.8	82.42
VIT_04s0044g00370.t01	Wine grape	extracellular, golgi	59.9	75.65
VIT_04s0044g00350.t01	Wine grape	extracellular, golgi, vacuole	25.45	75.57
VIT_04s0044g00410.t01	Wine grape	plasma membrane	69.41	68.88
VIT_04s0044g00430.t01	Wine grape	endoplasmic reticulum, extracellular	26.74	65.41
VIT_04s0044g00390.t01	Wine grape	plasma membrane	69.92	63.55
VIT_04s0044g00480.t01	Wine grape	mitochondrion	36.5	54.83
VIT_04s0044g00460.t01	Wine grape	plasma membrane	43.19	52.83
VIT_11s0052g00570.t01	Wine grape	extracellular	6.94	33.75
VIT_01s0010g03450.t01	Wine grape	plasma membrane	28.79	30.94
VIT_01s0010g03480.t01	Wine grape	plasma membrane	28.79	30.94
VIT_02s0025g03180.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	28.79	30.43

Protein Annotations

EntrezGene:100262524	wikigene:100262524	MapMan:24.2.1.5	ProteinID:CBI37614	ProteinID:CBI37614.3	UniProt:D7U438
InterPro:EamA_dom	EMBL:FN596506	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	EntrezGene:LOC100262524	wikigene:LOC100262524	PFAM:PF00892	PANTHER:PTHR31218	PANTHER:PTHR31218:SF7
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0001BE4E57	ArrayExpress:VIT_04s0044g00420	EnsemblPlantsGene:VIT_04s0044g00420	EnsemblPlants:VIT_04s0044g00420.t01
InterPro:WAT1-related	RefSeq:XP_002277208	RefSeq:XP_002277208.1	SEG:seg	:	:

Description

WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:D7U438]

Coordinates

chr4:+:21163786..21172634

Molecular Weight (calculated)

41717.0 Da

IEP (calculated)

9.565

GRAVY (calculated)

0.753

Length

389 amino acids

Sequence
(BLAST)

001: MVVVQVSLGG INIMYKLAKS DGMSMKVLIA CRYIFAAAFT VPLALIFDRK SRQKMTWMIF LQGSLCGLFG GSLGQNLYAQ SLTLTSATFA AAMTNIIPAM
101: AFVLAIVLRM ERLAIGTVAG KAKVLGTLLS ISGALVLTFY KGVELNLWST NINLLHHGAA TSQQSSNDQV LGSILAVVAC MCFAVWLIIQ AKISMVYPSY
201: SGTALTCVSA AIQSVVYAMC AEKKWSAWKL GWDIRLLTVV YTGVWATGLM VAIMSWAARL RGPLFVSSFY PLILVTVAIL GSLLLDEQLY LGSIIAVVLI
301: LVGLYGVLWG KGKEMKQSAQ VDGAKSSTEP ELRGIVIETS SSTEGKPTAT STICPIQAAD RGSGAFLFAL MFSNAQSVVI LSSLFWSYL

Best Arabidopsis Sequence Match ( AT1G25270.1 )
(BLAST)

001: MKSVVAMVAV QFIFAGMFIL FKITVDDGTN LKVLVAYRLS FATIFMLPLA LIFQRKKRPE FTWRLLLLAF VSGLLGAAIP NILYLPGMAR TSATFSAASS
101: IISPLITLVL GLVFRMETLR LGSNEGRAKL VGTLLGACGA LVFVFYKGIE IHIWSTHVDL LKGSHTGRAT TNHHVSILGV LMVLGSNVST SLWLLLQAKI
201: GKELGGLYWN TSLMNGVGSL VCVIIALCSD HDWEQWQLGW DINLLATLYS GIVVSGMVVP LVAWCIATKG PLFVTVFSPI RLVIVALIGS FALEEPLHLG
301: SIIGAMIMVG GVYLVVWCKM KEKKSASTTS DHIETNKNNK ELDLGNLSSV NRDVP

Arabidopsis Description

WAT1-related protein At1g25270 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT23]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.