Factsheet for VIT_04s0044g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
golgi 1
plasma membrane 2
mitochondrion 3
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g00350.t01	Wine grape	extracellular, golgi, vacuole	33.2	65.65
VIT_04s0044g00430.t01	Wine grape	endoplasmic reticulum, extracellular	30.12	49.06
VIT_04s0044g00360.t01	Wine grape	plasma membrane	54.83	44.38
VIT_04s0044g00460.t01	Wine grape	plasma membrane	52.9	43.08
VIT_04s0044g00370.t01	Wine grape	extracellular, golgi	47.49	39.94
VIT_04s0044g00420.t01	Wine grape	plastid	54.83	36.5
VIT_04s0044g00410.t01	Wine grape	plasma membrane	52.12	34.44
VIT_11s0052g00570.t01	Wine grape	extracellular	10.42	33.75
PGSC0003DMT400010115	Potato	golgi, plasma membrane, vacuole	44.79	33.24
VIT_04s0044g00380.t01	Wine grape	plasma membrane	55.21	32.65
VIT_04s0044g00390.t01	Wine grape	plasma membrane	51.74	31.31
Solyc11g005410.1.1	Tomato	plasma membrane	44.4	30.34
VIT_02s0025g03180.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	30.5	21.47
VIT_01s0010g03480.t01	Wine grape	plasma membrane	28.96	20.72
VIT_01s0010g03450.t01	Wine grape	plasma membrane	27.41	19.61

Protein Annotations

EntrezGene:100243646	wikigene:100243646	MapMan:24.2.1.5	ProteinID:CCB60456	ProteinID:CCB60456.1	InterPro:EamA_dom
UniProt:F6I0J0	EMBL:FN596506	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	EntrezGene:LOC100243646	wikigene:LOC100243646	PFAM:PF00892	PANTHER:PTHR31218	PANTHER:PTHR31218:SF7
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI000210A7D1	ArrayExpress:VIT_04s0044g00480	EnsemblPlantsGene:VIT_04s0044g00480	EnsemblPlants:VIT_04s0044g00480.t01
InterPro:WAT1-related	RefSeq:XP_002277022	RefSeq:XP_002277022.1	RefSeq:XP_002277059	RefSeq:XP_002277059.1	SEG:seg

Description

WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:F6I0J0]

Coordinates

chr4:+:21241493..21242831

Molecular Weight (calculated)

28255.9 Da

IEP (calculated)

9.717

GRAVY (calculated)

0.408

Length

259 amino acids

Sequence
(BLAST)

001: MNRLERLKIR TWAGRAKVIG TVLGIGGAMV LTFYKGPQIN IWSTKVNLLK HKDQHVAASH GELDNHVLGS ILAVASCFSY AIWLIIQAKM GERYPFDYSC
101: TALMCASATV QAIVYAMCKE KNWSAWKLGW NIRLLTVAYT GFFASGFMVV LVSWCVRKRG PLFVSIFNPL MLVFVAILGS LILDEKLHLG SIIGGVLIVI
201: GLYAMLWAKG AEMKSMATLS HSKSSKEAEI INVGTAPAKD DEDAIASDVS TAAAANPRQ

Best Arabidopsis Sequence Match ( AT1G25270.1 )
(BLAST)

001: MKSVVAMVAV QFIFAGMFIL FKITVDDGTN LKVLVAYRLS FATIFMLPLA LIFQRKKRPE FTWRLLLLAF VSGLLGAAIP NILYLPGMAR TSATFSAASS
101: IISPLITLVL GLVFRMETLR LGSNEGRAKL VGTLLGACGA LVFVFYKGIE IHIWSTHVDL LKGSHTGRAT TNHHVSILGV LMVLGSNVST SLWLLLQAKI
201: GKELGGLYWN TSLMNGVGSL VCVIIALCSD HDWEQWQLGW DINLLATLYS GIVVSGMVVP LVAWCIATKG PLFVTVFSPI RLVIVALIGS FALEEPLHLG
301: SIIGAMIMVG GVYLVVWCKM KEKKSASTTS DHIETNKNNK ELDLGNLSSV NRDVP

Arabidopsis Description

WAT1-related protein At1g25270 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT23]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.