Factsheet for VIT_18s0001g10300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g00170.t01	Wine grape	nucleus	51.2	48.85
GSMUA_Achr9P08780_001	Banana	nucleus	47.08	45.36
TraesCS6B01G142000.1	Wheat	nucleus	30.24	29.33
TraesCS6A01G114100.1	Wheat	nucleus, plastid	28.52	27.67
Zm00001d035154_P001	Maize	nucleus	25.43	27.31
HORVU6Hr1G020520.2	Barley	cytosol	27.84	27.27
Os04t0429400-01	Rice	nucleus	30.93	27.03
Os04t0429300-01	Rice	cytosol, nucleus, plastid	21.65	26.14
KXG24316	Sorghum	nucleus	25.43	23.2
EES05218	Sorghum	nucleus	24.4	21.32
EES14471	Sorghum	nucleus, plastid	19.59	20.73
OQU85093	Sorghum	nucleus	20.27	18.32
Zm00001d003677_P003	Maize	nucleus	32.99	15.38
KXG26314	Sorghum	nucleus, plastid	31.96	14.4

Protein Annotations

EntrezGene:100266006	wikigene:100266006	MapMan:15.5.32	Gene3D:4.10.280.10	InterPro:ACT_dom	EMBL:AM462788
ProteinID:CAN83348	ProteinID:CAN83348.1	ProteinID:CBI19498	ProteinID:CBI19498.3	ncoils:Coil	UniProt:E0CPT5
EMBL:FN595227	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100266006	wikigene:LOC100266006	PFAM:PF00010
PFscan:PS50888	PFscan:PS51671	PANTHER:PTHR11514	PANTHER:PTHR11514:SF96	SMART:SM00353	SUPFAM:SSF47459
TIGR:TC64154	UniParc:UPI00019854A7	ArrayExpress:VIT_18s0001g10300	EnsemblPlantsGene:VIT_18s0001g10300	EnsemblPlants:VIT_18s0001g10300.t01	unigene:Vvi.12877
RefSeq:XP_002284878	RefSeq:XP_002284878.2	RefSeq:XP_002284878.3	InterPro:bHLH_dom	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:8624970..8627770

Molecular Weight (calculated)

31908.7 Da

IEP (calculated)

7.902

GRAVY (calculated)

-0.539

Length

291 amino acids

Sequence
(BLAST)

001: MSEEASHGNL WQNHSCDFLN SDSNSGGSGG EKLGEKPPDS SSNSPVENRQ GMALVGRKRG RRAKASDGGG GESEHETHIW TERERRKKMR NMFSSLHALL
101: PQLPPKADKS TIVDEAVNYI KTLQNSLTKL QKQRHEMQQG ATAVDCEQSI ITSQALAPDT RETSLPAGDR SLKNYFSLPT NKPNLLSAPS SSLCFQTWFS
201: PNVVVSMCGN DAHISVCSSR KPGLLATIFY ILEKHKLDVL SAHISSTQQR SIYMIHAHAS GVSDDQLPKG LTVEEIFKLA VGEMTLWLSS C

Best Arabidopsis Sequence Match ( AT1G49770.1 )
(BLAST)

001: MTNAQELGQE GFMWGISNSD DSGGGCKRIE KEPLPSHPSH PSPEIQTTTV KKGKKRTKRN DKNHEEESPD HEIHIWTERE RRKKMRDMFS KLHALLPQLP
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL

Arabidopsis Description

BHLH95Transcription factor bHLH95 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.