CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85093	Sorghum	nucleus	47.75	49.38
EES14471	Sorghum	nucleus, plastid	24.02	29.09
KXG24316	Sorghum	nucleus	25.83	26.96
KRH70660	Soybean	nucleus	21.62	25.99
GSMUA_Achr9P08780_001	Banana	nucleus	23.42	25.83
Solyc01g020180.1.1	Tomato	cytosol	9.31	25.62
VIT_03s0063g00170.t01	Wine grape	nucleus	23.12	25.25
Solyc01g107960.2.1	Tomato	nucleus	22.52	25.08
VIT_18s0001g10300.t01	Wine grape	nucleus	21.32	24.4
PGSC0003DMT400038759	Potato	cytosol	17.12	24.36
PGSC0003DMT400066257	Potato	nucleus	21.92	23.93
PGSC0003DMT400066261	Potato	nucleus	21.62	23.68
Solyc01g107950.1.1	Tomato	nucleus	21.02	22.95
PGSC0003DMT400066259	Potato	nucleus	21.02	22.8
Solyc01g020170.1.1	Tomato	nucleus	20.72	22.7
PGSC0003DMT400066264	Potato	nucleus	20.72	22.48
PGSC0003DMT400095438	Potato	mitochondrion	19.82	22.37
Solyc01g107970.1.1	Tomato	nucleus	20.42	22.37
Solyc01g057300.1.1	Tomato	nucleus	20.42	22.15
Solyc01g014910.1.1	Tomato	cytoskeleton, cytosol, nucleus	20.12	21.27
CDY29335	Canola	nucleus	19.22	20.45
Bra040671.1-P	Field mustard	nucleus	18.92	20.13
Solyc09g018150.1.1	Tomato	nucleus	18.92	19.69
Solyc01g014960.1.1	Tomato	cytosol	14.71	19.68
CDY69996	Canola	nucleus	18.32	19.49
Bra018796.1-P	Field mustard	nucleus	17.12	19.0
CDY51046	Canola	nucleus	17.12	19.0
KRH70659	Soybean	cytosol, vacuole	15.32	18.68
AT1G49770.1	Thale cress	nucleus	17.12	18.51
CDY54067	Canola	nucleus	16.52	18.33
Solyc12g036430.1.1	Tomato	nucleus	8.71	17.68
Solyc09g018130.1.1	Tomato	cytoskeleton, cytosol, nucleus	9.91	17.65
KXG26314	Sorghum	nucleus, plastid	27.63	14.24

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8061041	InterPro:ACT_dom	UniProt:C5XU50	EnsemblPlants:EES05218
ProteinID:EES05218	ProteinID:EES05218.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PFscan:PS51671	PANTHER:PTHR11514	PANTHER:PTHR11514:SF98	SMART:SM00353	EnsemblPlantsGene:SORBI_3004G171500	SUPFAM:SSF47459
UniParc:UPI0001A8576F	RefSeq:XP_002452242.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:52405439..52408742

Molecular Weight (calculated)

35271.5 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.456

Length

333 amino acids

Sequence
(BLAST)

001: MAQNGPHGHQ VDAAPPTTVA VFSLTSAGPN GNGGSSAGNM ENLDASGMGK KNLIPDLNME ERDDSAGGSK DKPRSEAKVE VAAADADADA DADKGKSIAA
101: AGDDDGEPNV NIALERERRK RMKDLFRSLQ DLMPHVPQKT DKATLVGEAI TYIKVLEEKA DMLGKQALAA RQAAARGEAS SSSSLLSLRA MPPTAQGMAA
201: LCSWNAPRGW GGVPVQPAAP AVPASTSPMR CKTWAGPNMV LTVANDNAYI SVWAPRRANT LTMVMSVLDN HGIDVITAQI SSDRVRALFM IYAHVTGIGG
301: ENRRSSEEVY QRAVSEIVYR LHNNNNNNNN NNG

Best Arabidopsis Sequence Match ( AT1G49770.1 )
(BLAST)

001: MTNAQELGQE GFMWGISNSD DSGGGCKRIE KEPLPSHPSH PSPEIQTTTV KKGKKRTKRN DKNHEEESPD HEIHIWTERE RRKKMRDMFS KLHALLPQLP
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL

Arabidopsis Description

BHLH95Transcription factor bHLH95 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.