Factsheet for PGSC0003DMT400066259

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066264	Potato	nucleus	89.25	89.25
PGSC0003DMT400066257	Potato	nucleus	85.34	85.9
PGSC0003DMT400038759	Potato	cytosol	62.54	82.05
PGSC0003DMT400066261	Potato	nucleus	80.13	80.92
PGSC0003DMT400095438	Potato	mitochondrion	69.71	72.54
Solyc12g036430.1.1	Tomato	nucleus	31.27	58.54
VIT_03s0063g00170.t01	Wine grape	nucleus	39.41	39.67
GSMUA_Achr9P08780_001	Banana	nucleus	34.2	34.77
KRH70660	Soybean	nucleus	31.27	34.66
CDY51046	Canola	nucleus	32.25	33.0
Bra018796.1-P	Field mustard	nucleus	31.92	32.67
CDY54067	Canola	nucleus	31.6	32.33
AT1G49770.1	Thale cress	nucleus	30.62	30.52
CDY69996	Canola	nucleus	30.94	30.35
Bra040671.1-P	Field mustard	nucleus	30.62	30.03
TraesCS6B01G142000.1	Wheat	nucleus	28.34	29.0
CDY29335	Canola	nucleus	29.32	28.75
TraesCS6A01G114100.1	Wheat	nucleus, plastid	27.36	28.0
HORVU6Hr1G020520.2	Barley	cytosol	26.38	27.27
Os04t0429300-01	Rice	cytosol, nucleus, plastid	19.54	24.9
Zm00001d035154_P001	Maize	nucleus	21.82	24.72
Os04t0429400-01	Rice	nucleus	26.06	24.02
KRH70659	Soybean	cytosol, vacuole	19.54	21.98
EES14471	Sorghum	nucleus, plastid	19.54	21.82
KXG24316	Sorghum	nucleus	22.48	21.63
OQU85093	Sorghum	nucleus	22.15	21.12
EES05218	Sorghum	nucleus	22.8	21.02
Zm00001d003677_P003	Maize	nucleus	28.66	14.1
KXG26314	Sorghum	nucleus, plastid	28.99	13.78

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	InterPro:ACT_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638
UniProt:M1CF94	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400025781	PGSC:PGSC0003DMG400025781	EnsemblPlants:PGSC0003DMT400066259	PFscan:PS50888
PFscan:PS51671	PANTHER:PTHR11514	PANTHER:PTHR11514:SF96	SMART:SM00353	SUPFAM:SSF47459	SUPFAM:SSF55021
UniParc:UPI00029519C5	InterPro:bHLH_dom	:	:	:	:

Description

Transcription factor bHLH95 [Source:PGSC_GENE;Acc:PGSC0003DMG400025781]

Coordinates

chr1:+:84340754..84343073

Molecular Weight (calculated)

34355.9 Da

IEP (calculated)

7.167

GRAVY (calculated)

-0.526

Length

307 amino acids

Sequence
(BLAST)

001: MNGGGENNDG LPWETNDFWS YLNLNDIQVG SGETFEGDKL PDLTRSDTCQ PLTVVNEVVE PTIDVGKKRI PPNRKRNGKG IAEPNFGADE AKGKKESEHE
101: IHIWTERERR KKMRTLLETL QALVPNLLAK ADKSTIVYEA VNHIQKLQNT FKKLESQKLE RLEEYSIRLM SSQKVGNSWE KYVGDQGSTN NSTAITPTTH
201: GASPLIPTSF MTWSSPNVIL NICGEDAHIS VCCPKKPGLF TIICYVLEKH KIDIVSAQIS SDQFRSMFMI QAHAKGGREL AQFSGAFTVE DMYKGATNEI
301: KLLITPR

Best Arabidopsis Sequence Match ( AT1G49770.1 )
(BLAST)

001: MTNAQELGQE GFMWGISNSD DSGGGCKRIE KEPLPSHPSH PSPEIQTTTV KKGKKRTKRN DKNHEEESPD HEIHIWTERE RRKKMRDMFS KLHALLPQLP
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL

Arabidopsis Description

BHLH95Transcription factor bHLH95 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.