Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54067 | Canola | nucleus | 66.23 | 68.0 |
| CDY51046 | Canola | nucleus | 65.91 | 67.67 |
| Bra018796.1-P | Field mustard | nucleus | 65.91 | 67.67 |
| Bra040671.1-P | Field mustard | nucleus | 65.26 | 64.22 |
| CDY29335 | Canola | nucleus | 65.26 | 64.22 |
| CDY69996 | Canola | nucleus | 65.26 | 64.22 |
| VIT_03s0063g00170.t01 | Wine grape | nucleus | 39.29 | 39.67 |
| Solyc01g020180.1.1 | Tomato | cytosol | 14.61 | 37.19 |
| GSMUA_Achr9P08780_001 | Banana | nucleus | 34.09 | 34.77 |
| KRH70660 | Soybean | nucleus | 30.84 | 34.3 |
| PGSC0003DMT400066264 | Potato | nucleus | 31.49 | 31.6 |
| Solyc01g107960.2.1 | Tomato | nucleus | 30.52 | 31.44 |
| PGSC0003DMT400066261 | Potato | nucleus | 30.84 | 31.25 |
| PGSC0003DMT400066257 | Potato | nucleus | 30.84 | 31.15 |
| PGSC0003DMT400066259 | Potato | nucleus | 30.52 | 30.62 |
| Solyc01g107950.1.1 | Tomato | nucleus | 30.19 | 30.49 |
| Solyc01g107970.1.1 | Tomato | nucleus | 28.9 | 29.28 |
| PGSC0003DMT400095438 | Potato | mitochondrion | 27.92 | 29.15 |
| Solyc01g057300.1.1 | Tomato | nucleus | 28.57 | 28.66 |
| Solyc01g020170.1.1 | Tomato | nucleus | 27.92 | 28.29 |
| PGSC0003DMT400038759 | Potato | cytosol | 21.43 | 28.21 |
| TraesCS6B01G142000.1 | Wheat | nucleus | 26.62 | 27.33 |
| Solyc01g014910.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 27.27 | 26.67 |
| TraesCS6A01G114100.1 | Wheat | nucleus, plastid | 25.0 | 25.67 |
| Solyc09g018150.1.1 | Tomato | nucleus | 26.62 | 25.62 |
| Solyc01g014960.1.1 | Tomato | cytosol | 20.45 | 25.3 |
| Zm00001d035154_P001 | Maize | nucleus | 21.75 | 24.72 |
| HORVU6Hr1G020520.2 | Barley | cytosol | 23.7 | 24.58 |
| Solyc12g036430.1.1 | Tomato | nucleus | 12.99 | 24.39 |
| Solyc09g018130.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 14.61 | 24.06 |
| Os04t0429400-01 | Rice | nucleus | 25.97 | 24.02 |
| Os04t0429300-01 | Rice | cytosol, nucleus, plastid | 18.51 | 23.65 |
| KXG24316 | Sorghum | nucleus | 22.4 | 21.63 |
| EES14471 | Sorghum | nucleus, plastid | 18.51 | 20.73 |
| KRH70659 | Soybean | cytosol, vacuole | 16.88 | 19.05 |
| EES05218 | Sorghum | nucleus | 18.51 | 17.12 |
| OQU85093 | Sorghum | nucleus | 16.88 | 16.15 |
| KXG26314 | Sorghum | nucleus, plastid | 33.12 | 15.79 |
| Zm00001d003677_P003 | Maize | nucleus | 27.6 | 13.62 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:841400 | ProteinID:AAG13058.1 | ProteinID:AEE32474.1 | EMBL:AF488623 |
| ArrayExpress:AT1G49770 | EnsemblPlantsGene:AT1G49770 | RefSeq:AT1G49770 | TAIR:AT1G49770 | RefSeq:AT1G49770-TAIR-G | EnsemblPlants:AT1G49770.1 |
| TAIR:AT1G49770.1 | Unigene:At.38170 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_175399.2 |
| PFAM:PF00010 | PO:PO:0009089 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF98 | UniProt:Q9FXA3 |
| Symbol:RGE1 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000019703C | InterPro:bHLH_dom | SEG:seg |
Description
BHLH95Transcription factor bHLH95 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA3]
Coordinates
chr1:+:18424578..18426782
Molecular Weight (calculated)
34184.3 Da
IEP (calculated)
6.712
GRAVY (calculated)
-0.456
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNAQELGQE GFMWGISNSD DSGGGCKRIE KEPLPSHPSH PSPEIQTTTV KKGKKRTKRN DKNHEEESPD HEIHIWTERE RRKKMRDMFS KLHALLPQLP
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.