Factsheet for Solyc09g018130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g014910.1.1	Tomato	cytoskeleton, cytosol, nucleus	73.8	43.81
PGSC0003DMT400095438	Potato	mitochondrion	64.71	41.02
Solyc12g036430.1.1	Tomato	nucleus	34.76	39.63
Solyc09g018150.1.1	Tomato	nucleus	59.36	34.69
Solyc01g107950.1.1	Tomato	nucleus	53.48	32.79
Solyc01g057300.1.1	Tomato	nucleus	46.52	28.34
Solyc01g014960.1.1	Tomato	cytosol	36.36	27.31
Solyc01g020170.1.1	Tomato	nucleus	44.38	27.3
Solyc01g107970.1.1	Tomato	nucleus	44.38	27.3
Solyc01g107960.2.1	Tomato	nucleus	43.32	27.09
Solyc01g020180.1.1	Tomato	cytosol	12.3	19.01
VIT_03s0063g00170.t01	Wine grape	nucleus	26.74	16.39
CDY54067	Canola	nucleus	24.06	15.0
Bra040671.1-P	Field mustard	nucleus	24.6	14.7
AT1G49770.1	Thale cress	nucleus	24.06	14.61
KRH70660	Soybean	nucleus	21.39	14.44
CDY69996	Canola	nucleus	24.06	14.38
CDY29335	Canola	nucleus	23.53	14.06
CDY51046	Canola	nucleus	22.46	14.0
Bra018796.1-P	Field mustard	nucleus	22.46	14.0
GSMUA_Achr9P08780_001	Banana	nucleus	22.46	13.91
Zm00001d035154_P001	Maize	nucleus	18.18	12.55
HORVU6Hr1G020520.2	Barley	cytosol	19.79	12.46
TraesCS6B01G142000.1	Wheat	nucleus	18.18	11.33
Os04t0429400-01	Rice	nucleus	19.79	11.11
Os04t0429300-01	Rice	cytosol, nucleus, plastid	13.9	10.79
KRH70659	Soybean	cytosol, vacuole	15.51	10.62
TraesCS6A01G114100.1	Wheat	nucleus, plastid	16.58	10.33
EES05218	Sorghum	nucleus	17.65	9.91
KXG24316	Sorghum	nucleus	16.04	9.4
OQU85093	Sorghum	nucleus	16.04	9.32
EES14471	Sorghum	nucleus, plastid	12.3	8.36
Zm00001d003677_P003	Maize	nucleus	23.53	7.05
KXG26314	Sorghum	nucleus, plastid	22.46	6.5

Protein Annotations

EnsemblPlants:Solyc09g018130.1.1	EnsemblPlantsGene:Solyc09g018130.1	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF96	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000276C10B	UniProt:K4CS80	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chr9:+:13162699..13164313

Molecular Weight (calculated)

21145.1 Da

IEP (calculated)

7.726

GRAVY (calculated)

-0.584

Length

187 amino acids

Sequence
(BLAST)

001: MNGGGESNHV FSWEIDDVLS YLNLNDNQIG SGTTFEGDMM TNPIRFDTYQ SLTVVNEVVE SSTNVAKKRS PPNLKKNGKG IVEPKSSVDG VRDKGSLEHE
101: IHISTERKRT KKIWILFETL RALIPNISAK ADECTIIDKA VNHILKLKNT FEKLKRENLE GFQEHNIRLI SSQKFPDVGN SWEKLFG

Best Arabidopsis Sequence Match ( AT1G49770.1 )
(BLAST)

001: MTNAQELGQE GFMWGISNSD DSGGGCKRIE KEPLPSHPSH PSPEIQTTTV KKGKKRTKRN DKNHEEESPD HEIHIWTERE RRKKMRDMFS KLHALLPQLP
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL

Arabidopsis Description

BHLH95Transcription factor bHLH95 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.