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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 3
  • mitochondrion 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g107970.1.1 Tomato nucleus 85.95 34.21
Solyc01g020170.1.1 Tomato nucleus 83.47 33.22
Solyc01g107950.1.1 Tomato nucleus 81.82 32.46
Solyc01g107960.2.1 Tomato nucleus 75.21 30.43
Solyc01g057300.1.1 Tomato nucleus 74.38 29.32
Solyc01g014960.1.1 Tomato cytosol 53.72 26.1
Solyc01g014910.1.1 Tomato cytoskeleton, cytosol, nucleus 61.98 23.81
Solyc09g018150.1.1 Tomato nucleus 59.5 22.5
VIT_03s0063g00170.t01 Wine grape nucleus 42.15 16.72
Bra018796.1-P Field mustard nucleus 38.84 15.67
CDY51046 Canola nucleus 38.84 15.67
CDY54067 Canola nucleus 38.84 15.67
GSMUA_Achr9P08780_001 Banana nucleus 38.02 15.23
AT1G49770.1 Thale cress nucleus 37.19 14.61
KRH70660 Soybean nucleus 32.23 14.08
Os04t0429300-01 Rice cytosol, nucleus, plastid 26.45 13.28
Bra040671.1-P Field mustard nucleus 33.88 13.1
CDY29335 Canola nucleus 33.88 13.1
CDY69996 Canola nucleus 33.88 13.1
TraesCS6B01G142000.1 Wheat nucleus 31.41 12.67
TraesCS6A01G114100.1 Wheat nucleus, plastid 31.41 12.67
Zm00001d035154_P001 Maize nucleus 28.1 12.55
EES14471 Sorghum nucleus, plastid 28.1 12.36
Solyc09g018130.1.1 Tomato cytoskeleton, cytosol, nucleus 19.01 12.3
HORVU6Hr1G020520.2 Barley cytosol 27.27 11.11
Os04t0429400-01 Rice nucleus 30.58 11.11
KXG24316 Sorghum nucleus 27.27 10.34
KRH70659 Soybean cytosol, vacuole 23.14 10.26
OQU85093 Sorghum nucleus 26.45 9.94
EES05218 Sorghum nucleus 25.62 9.31
Solyc12g036430.1.1 Tomato nucleus 11.57 8.54
Zm00001d003677_P003 Maize nucleus 37.19 7.21
KXG26314 Sorghum nucleus, plastid 34.71 6.5
Protein Annotations
EnsemblPlants:Solyc01g020180.1.1EnsemblPlantsGene:Solyc01g020180.1Gene3D:4.10.280.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR036638ncoils:CoilPANTHER:PTHR11514PANTHER:PTHR11514:SF96
SUPFAM:SSF47459UniParc:UPI0002762D1CUniProt:K4AV00MapMan:15.5.32::
Description
No Description!
Coordinates
chr1:+:27860763..27862075
Molecular Weight (calculated)
13534.2 Da
IEP (calculated)
9.984
GRAVY (calculated)
-0.369
Length
121 amino acids
Sequence
(BLAST)
001: MWILFKTLHA LVPNLPSKAD KSKIVYGTVN RIRKLENTFK KLESQKLKRL EEYNIRLTGS QKVGNSWENY VGDQGSTCNS TAITPTNHGA SPLIPTGFMT
101: WSSPNVILNV YGEDAHINVL S
Best Arabidopsis Sequence Match ( AT1G49770.1 )
(BLAST)
001: MTNAQELGQE GFMWGISNSD DSGGGCKRIE KEPLPSHPSH PSPEIQTTTV KKGKKRTKRN DKNHEEESPD HEIHIWTERE RRKKMRDMFS KLHALLPQLP
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL
Arabidopsis Description
BHLH95Transcription factor bHLH95 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.