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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • plastid 1
  • extracellular 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:extracellular, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g018150.1.1 Tomato nucleus 84.34 65.62
PGSC0003DMT400095438 Potato mitochondrion 72.69 61.36
Solyc01g014910.1.1 Tomato cytoskeleton, cytosol, nucleus 69.48 54.92
Solyc01g020180.1.1 Tomato cytosol 26.1 53.72
Solyc01g107950.1.1 Tomato nucleus 61.45 50.16
Solyc01g107970.1.1 Tomato nucleus 56.63 46.38
Solyc01g057300.1.1 Tomato nucleus 56.63 45.93
Solyc01g020170.1.1 Tomato nucleus 55.82 45.72
Solyc01g107960.2.1 Tomato nucleus 53.41 44.48
Solyc09g018130.1.1 Tomato cytoskeleton, cytosol, nucleus 27.31 36.36
Solyc12g036430.1.1 Tomato nucleus 19.68 29.88
VIT_03s0063g00170.t01 Wine grape nucleus 33.73 27.54
GSMUA_Achr9P08780_001 Banana nucleus 30.52 25.17
KRH70660 Soybean nucleus 26.91 24.19
CDY54067 Canola nucleus 25.3 21.0
Bra018796.1-P Field mustard nucleus 25.3 21.0
CDY51046 Canola nucleus 25.3 21.0
CDY29335 Canola nucleus 26.1 20.77
AT1G49770.1 Thale cress nucleus 25.3 20.45
CDY69996 Canola nucleus 25.7 20.45
Bra040671.1-P Field mustard nucleus 25.3 20.13
Zm00001d035154_P001 Maize nucleus 21.69 19.93
HORVU6Hr1G020520.2 Barley cytosol 22.49 18.86
EES14471 Sorghum nucleus, plastid 20.08 18.18
TraesCS6B01G142000.1 Wheat nucleus 20.88 17.33
TraesCS6A01G114100.1 Wheat nucleus, plastid 19.68 16.33
KXG24316 Sorghum nucleus 20.88 16.3
KRH70659 Soybean cytosol, vacuole 17.27 15.75
Os04t0429300-01 Rice cytosol, nucleus, plastid 14.86 15.35
Os04t0429400-01 Rice nucleus 20.08 15.02
EES05218 Sorghum nucleus 19.68 14.71
OQU85093 Sorghum nucleus 17.67 13.66
KXG26314 Sorghum nucleus, plastid 23.29 8.98
Zm00001d003677_P003 Maize nucleus 21.29 8.49
Protein Annotations
EnsemblPlants:Solyc01g014960.1.1EnsemblPlantsGene:Solyc01g014960.1GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046983
ncoils:CoilPANTHER:PTHR11514PANTHER:PTHR11514:SF96UniParc:UPI00027624FFUniProt:K4AUD0MapMan:35.2
Description
No Description!
Coordinates
chr1:+:16206318..16208926
Molecular Weight (calculated)
27459.1 Da
IEP (calculated)
6.227
GRAVY (calculated)
-0.485
Length
249 amino acids
Sequence
(BLAST)
001: MNGGGENNHV FPWETNDGWP YQNLNGNQIG SGVTFEGDKL QDPNRFDTYE PLTAVNEVIE ASTNAGKSTI VEKAVNHIQK LQNTFEKLEH EKLKRLQEHN
101: VRCMSSQKFT NAGNNWEKYQ GDQGSTHNSS SIASTTHGTN PLMVNNNIPT GFVTWSSPNV IVNVCGENAH ISVCCPKKSG LFTFIGYVLG KHQIEILSAQ
201: VSCDQFRSMF MIQAHATGGT GIAQVSEASR VEEMYKQVAI EIMSFATPN
Best Arabidopsis Sequence Match ( AT1G49770.1 )
(BLAST)
001: MTNAQELGQE GFMWGISNSD DSGGGCKRIE KEPLPSHPSH PSPEIQTTTV KKGKKRTKRN DKNHEEESPD HEIHIWTERE RRKKMRDMFS KLHALLPQLP
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL
Arabidopsis Description
BHLH95Transcription factor bHLH95 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.