Factsheet for PGSC0003DMT400095438

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g014960.1.1	Tomato	cytosol	61.36	72.69
Solyc09g018150.1.1	Tomato	nucleus	76.95	70.94
PGSC0003DMT400066257	Potato	nucleus	73.22	70.82
PGSC0003DMT400066264	Potato	nucleus	72.88	70.03
PGSC0003DMT400066259	Potato	nucleus	72.54	69.71
Solyc01g014910.1.1	Tomato	cytoskeleton, cytosol, nucleus	73.9	69.21
PGSC0003DMT400038759	Potato	cytosol	52.2	65.81
PGSC0003DMT400066261	Potato	nucleus	67.46	65.46
Solyc09g018130.1.1	Tomato	cytoskeleton, cytosol, nucleus	41.02	64.71
VIT_03s0063g00170.t01	Wine grape	nucleus	37.29	36.07
GSMUA_Achr9P08780_001	Banana	nucleus	33.9	33.11
CDY54067	Canola	nucleus	30.51	30.0
CDY51046	Canola	nucleus	29.49	29.0
Bra018796.1-P	Field mustard	nucleus	29.49	29.0
KRH70660	Soybean	nucleus	26.78	28.52
Bra040671.1-P	Field mustard	nucleus	29.83	28.11
AT1G49770.1	Thale cress	nucleus	29.15	27.92
CDY69996	Canola	nucleus	29.49	27.8
CDY29335	Canola	nucleus	29.15	27.48
Zm00001d035154_P001	Maize	nucleus	23.73	25.83
TraesCS6B01G142000.1	Wheat	nucleus	24.41	24.0
HORVU6Hr1G020520.2	Barley	cytosol	23.39	23.23
Os04t0429300-01	Rice	cytosol, nucleus, plastid	18.64	22.82
TraesCS6A01G114100.1	Wheat	nucleus, plastid	22.71	22.33
KXG24316	Sorghum	nucleus	23.73	21.94
Os04t0429400-01	Rice	nucleus	23.39	20.72
EES05218	Sorghum	nucleus	22.37	19.82
EES14471	Sorghum	nucleus, plastid	17.63	18.91
KRH70659	Soybean	cytosol, vacuole	17.29	18.68
OQU85093	Sorghum	nucleus	20.34	18.63
Zm00001d003677_P003	Maize	nucleus	26.78	12.66
KXG26314	Sorghum	nucleus, plastid	27.12	12.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400095438	EnsemblPlantsGene:PGSC0003DMG400045009	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF96	PFAM:PF00010	PFscan:PS50888	PGSC:PGSC0003DMG400045009	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000294A543	UniProt:M1DWB0	MapMan:15.5.32	:

Description

Basic helix-loop-helix family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400045009]

Coordinates

chr1:+:55197969..55200210

Molecular Weight (calculated)

33010.2 Da

IEP (calculated)

8.224

GRAVY (calculated)

-0.435

Length

295 amino acids

Sequence
(BLAST)

001: MNGGGENNHV FPWETNDVWS YLNLNDNQIG SGVTFEGDKL PDPTRSDTYQ PLTVVNEVIE ASTNVGKKRS PPNRKKNGKR IAELNSGADE TGDRGGLEHE
101: IHIWTARERT KKIGILFETL RASIPNLPAK ADKSTIVEKA VNYILKLQNT FEKLEQEKLE RLQEHSIRLM SSQKFTNAGN SWEKYLGDQG STRNSSAITP
201: TTHGASPLMV NNNIPTGFMT WSSPNVILNV CGEDAHISVC SPKKSGLFTF ICYVLGKHKI EIVCAQVSSD QFRSMFMIQA HVSPFIFFKI ICWSF

Best Arabidopsis Sequence Match ( AT1G49770.1 )
(BLAST)

001: MTNAQELGQE GFMWGISNSD DSGGGCKRIE KEPLPSHPSH PSPEIQTTTV KKGKKRTKRN DKNHEEESPD HEIHIWTERE RRKKMRDMFS KLHALLPQLP
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL

Arabidopsis Description

BHLH95Transcription factor bHLH95 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.