Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- plastid 1
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066261 | Potato | nucleus | 87.61 | 67.43 |
| PGSC0003DMT400066264 | Potato | nucleus | 83.33 | 63.52 |
| PGSC0003DMT400066259 | Potato | nucleus | 82.05 | 62.54 |
| Solyc01g057300.1.1 | Tomato | nucleus | 81.62 | 62.22 |
| PGSC0003DMT400066257 | Potato | nucleus | 79.49 | 60.98 |
| PGSC0003DMT400095438 | Potato | mitochondrion | 65.81 | 52.2 |
| VIT_03s0063g00170.t01 | Wine grape | nucleus | 38.89 | 29.84 |
| GSMUA_Achr9P08780_001 | Banana | nucleus | 32.05 | 24.83 |
| KRH70660 | Soybean | nucleus | 27.35 | 23.1 |
| CDY51046 | Canola | nucleus | 29.06 | 22.67 |
| Bra018796.1-P | Field mustard | nucleus | 29.06 | 22.67 |
| CDY69996 | Canola | nucleus | 29.49 | 22.04 |
| CDY54067 | Canola | nucleus | 28.21 | 22.0 |
| CDY29335 | Canola | nucleus | 29.06 | 21.73 |
| Bra040671.1-P | Field mustard | nucleus | 29.06 | 21.73 |
| AT1G49770.1 | Thale cress | nucleus | 28.21 | 21.43 |
| TraesCS6B01G142000.1 | Wheat | nucleus | 26.92 | 21.0 |
| TraesCS6A01G114100.1 | Wheat | nucleus, plastid | 26.92 | 21.0 |
| Zm00001d035154_P001 | Maize | nucleus | 23.93 | 20.66 |
| HORVU6Hr1G020520.2 | Barley | cytosol | 25.64 | 20.2 |
| KXG24316 | Sorghum | nucleus | 25.64 | 18.81 |
| Os04t0429300-01 | Rice | cytosol, nucleus, plastid | 19.23 | 18.67 |
| KRH70659 | Soybean | cytosol, vacuole | 21.37 | 18.32 |
| EES14471 | Sorghum | nucleus, plastid | 21.37 | 18.18 |
| Os04t0429400-01 | Rice | nucleus | 24.79 | 17.42 |
| EES05218 | Sorghum | nucleus | 24.36 | 17.12 |
| OQU85093 | Sorghum | nucleus | 22.22 | 16.15 |
| Zm00001d003677_P003 | Maize | nucleus | 28.21 | 10.58 |
| KXG26314 | Sorghum | nucleus, plastid | 27.35 | 9.91 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400038759 | EnsemblPlantsGene:PGSC0003DMG400014979 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF96 | PGSC:PGSC0003DMG400014979 | SUPFAM:SSF55021 |
| UniParc:UPI000295A32D | UniProt:M1B7C1 | MapMan:35.1 | : | : | : |
Description
Basic helix-loop-helix family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014979]
Coordinates
chr1:-:33332785..33335374
Molecular Weight (calculated)
25846.6 Da
IEP (calculated)
4.807
GRAVY (calculated)
-0.276
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEGGKNDHG LYADVWSYLD LNDYQLGSGE TFEGDKLLDP TRSDTCQPVT TVNEVVEVDQ STIVGEAVNH ILKLQNTFKK LESQKLERLE EYSIRLMSSQ
101: KVGNSWEKYV GDQGSTNNST VITPITHGAS PLIPTGFMTW SSPNVILNVC GEDAHISVCC PKKPQLFTII CYVLEKHKID ILSAQVSSDQ FRSMFMIQAH
201: AKGGSGLAQF SEAFTVEDVY KQAASEIMAL TTPK
101: KVGNSWEKYV GDQGSTNNST VITPITHGAS PLIPTGFMTW SSPNVILNVC GEDAHISVCC PKKPQLFTII CYVLEKHKID ILSAQVSSDQ FRSMFMIQAH
201: AKGGSGLAQF SEAFTVEDVY KQAASEIMAL TTPK
001: MTNAQELGQE GFMWGISNSD DSGGGCKRIE KEPLPSHPSH PSPEIQTTTV KKGKKRTKRN DKNHEEESPD HEIHIWTERE RRKKMRDMFS KLHALLPQLP
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL
Arabidopsis Description
BHLH95Transcription factor bHLH95 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.