Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69996 | Canola | nucleus | 97.44 | 97.44 |
| CDY29335 | Canola | nucleus | 89.78 | 89.78 |
| Bra018796.1-P | Field mustard | nucleus | 69.01 | 72.0 |
| AT1G49770.1 | Thale cress | nucleus | 64.22 | 65.26 |
| VIT_03s0063g00170.t01 | Wine grape | nucleus | 37.7 | 38.69 |
| KRH70660 | Soybean | nucleus | 31.63 | 35.74 |
| GSMUA_Achr9P08780_001 | Banana | nucleus | 33.87 | 35.1 |
| Solyc01g020180.1.1 | Tomato | cytosol | 13.1 | 33.88 |
| Solyc01g107950.1.1 | Tomato | nucleus | 31.95 | 32.79 |
| PGSC0003DMT400066261 | Potato | nucleus | 31.63 | 32.57 |
| PGSC0003DMT400066257 | Potato | nucleus | 30.99 | 31.8 |
| Solyc01g107960.2.1 | Tomato | nucleus | 30.03 | 31.44 |
| PGSC0003DMT400066264 | Potato | nucleus | 30.35 | 30.94 |
| PGSC0003DMT400066259 | Potato | nucleus | 30.03 | 30.62 |
| PGSC0003DMT400095438 | Potato | mitochondrion | 28.11 | 29.83 |
| PGSC0003DMT400038759 | Potato | cytosol | 21.73 | 29.06 |
| Solyc01g020170.1.1 | Tomato | nucleus | 28.11 | 28.95 |
| Solyc01g057300.1.1 | Tomato | nucleus | 28.11 | 28.66 |
| Solyc01g107970.1.1 | Tomato | nucleus | 27.8 | 28.62 |
| Zm00001d035154_P001 | Maize | nucleus | 23.96 | 27.68 |
| Solyc01g014910.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 27.48 | 27.3 |
| HORVU6Hr1G020520.2 | Barley | cytosol | 24.92 | 26.26 |
| Solyc09g018150.1.1 | Tomato | nucleus | 26.52 | 25.94 |
| Solyc01g014960.1.1 | Tomato | cytosol | 20.13 | 25.3 |
| TraesCS6B01G142000.1 | Wheat | nucleus | 23.64 | 24.67 |
| Solyc09g018130.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 14.7 | 24.6 |
| Os04t0429300-01 | Rice | cytosol, nucleus, plastid | 18.85 | 24.48 |
| Solyc12g036430.1.1 | Tomato | nucleus | 12.78 | 24.39 |
| TraesCS6A01G114100.1 | Wheat | nucleus, plastid | 23.0 | 24.0 |
| Os04t0429400-01 | Rice | nucleus | 25.24 | 23.72 |
| KXG24316 | Sorghum | nucleus | 23.32 | 22.88 |
| EES14471 | Sorghum | nucleus, plastid | 17.89 | 20.36 |
| KRH70659 | Soybean | cytosol, vacuole | 17.57 | 20.15 |
| EES05218 | Sorghum | nucleus | 20.13 | 18.92 |
| OQU85093 | Sorghum | nucleus | 16.29 | 15.84 |
| KXG26314 | Sorghum | nucleus, plastid | 30.99 | 15.02 |
| Zm00001d003677_P003 | Maize | nucleus | 28.11 | 14.1 |
Protein Annotations
| EnsemblPlants:Bra040671.1 | EnsemblPlants:Bra040671.1-P | EnsemblPlantsGene:Bra040671 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF98 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002547E92 | UniProt:M4FHU2 | MapMan:15.5.32 | : |
Description
AT1G49770 (E=1e-119) RGE1, ZOU | RGE1 (RETARDED GROWTH OF EMBRYO 1); DNA binding / transcription factor
Coordinates
chrA05:+:13180598..13182491
Molecular Weight (calculated)
34890.2 Da
IEP (calculated)
6.859
GRAVY (calculated)
-0.517
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIQFNMTNA QELGQESIVW GISNSDDSQG GCKRIDKQPP LMRPSHPSEI PTSDKKASKG KKRTQRNEKN HVEESPDHEI HIWTERERRK KMRDMFAKLH
101: ALLPQLPPKA DKSTIVDEAV SSIKSLEQTL HNLQMRKLEK LQYSSASNTT ATTAFPYDPS SSPTILLTPI SNQPHILPVG AASADSYSRE ALLANQISSS
201: SMNLPYPCDD PTAEFDTWST RNAVLNICGN EAFFSLCCPK DKSGVFTNMC YLFEKYNIDV IFASVSSNVF RSTYMIQAQV KPSYENQLLG DGFGAAEIFK
301: QAAQEMALCF SSS
101: ALLPQLPPKA DKSTIVDEAV SSIKSLEQTL HNLQMRKLEK LQYSSASNTT ATTAFPYDPS SSPTILLTPI SNQPHILPVG AASADSYSRE ALLANQISSS
201: SMNLPYPCDD PTAEFDTWST RNAVLNICGN EAFFSLCCPK DKSGVFTNMC YLFEKYNIDV IFASVSSNVF RSTYMIQAQV KPSYENQLLG DGFGAAEIFK
301: QAAQEMALCF SSS
001: MTNAQELGQE GFMWGISNSD DSGGGCKRIE KEPLPSHPSH PSPEIQTTTV KKGKKRTKRN DKNHEEESPD HEIHIWTERE RRKKMRDMFS KLHALLPQLP
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL
Arabidopsis Description
BHLH95Transcription factor bHLH95 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.