Factsheet for PGSC0003DMT400066261

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038759	Potato	cytosol	67.43	87.61
PGSC0003DMT400066264	Potato	nucleus	82.24	81.43
PGSC0003DMT400066259	Potato	nucleus	80.92	80.13
PGSC0003DMT400066257	Potato	nucleus	78.62	78.36
Solyc01g107970.1.1	Tomato	nucleus	78.29	78.29
Solyc01g107960.2.1	Tomato	nucleus	76.64	77.93
Solyc01g020170.1.1	Tomato	nucleus	77.63	77.63
PGSC0003DMT400095438	Potato	mitochondrion	65.46	67.46
VIT_03s0063g00170.t01	Wine grape	nucleus	39.14	39.02
KRH70660	Soybean	nucleus	32.57	35.74
CDY51046	Canola	nucleus	33.88	34.33
Bra018796.1-P	Field mustard	nucleus	33.55	34.0
GSMUA_Achr9P08780_001	Banana	nucleus	33.55	33.77
CDY54067	Canola	nucleus	32.89	33.33
CDY69996	Canola	nucleus	32.89	31.95
Bra040671.1-P	Field mustard	nucleus	32.57	31.63
CDY29335	Canola	nucleus	32.24	31.31
AT1G49770.1	Thale cress	nucleus	31.25	30.84
TraesCS6B01G142000.1	Wheat	nucleus	28.29	28.67
TraesCS6A01G114100.1	Wheat	nucleus, plastid	27.96	28.33
HORVU6Hr1G020520.2	Barley	cytosol	26.97	27.61
Os04t0429300-01	Rice	cytosol, nucleus, plastid	20.39	25.73
Zm00001d035154_P001	Maize	nucleus	22.37	25.09
Os04t0429400-01	Rice	nucleus	25.33	23.12
KXG24316	Sorghum	nucleus	23.68	22.57
EES14471	Sorghum	nucleus, plastid	20.39	22.55
KRH70659	Soybean	cytosol, vacuole	19.74	21.98
EES05218	Sorghum	nucleus	23.68	21.62
OQU85093	Sorghum	nucleus	21.05	19.88
Zm00001d003677_P003	Maize	nucleus	29.93	14.58
KXG26314	Sorghum	nucleus, plastid	29.28	13.78

Protein Annotations

EnsemblPlants:PGSC0003DMT400066261	EnsemblPlantsGene:PGSC0003DMG400025782	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF96	PFAM:PF00010	PFscan:PS50888	PGSC:PGSC0003DMG400025782	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295B274	UniProt:M1CF95	MapMan:15.5.32	:

Description

Transcription factor bHLH95 [Source:PGSC_GENE;Acc:PGSC0003DMG400025782]

Coordinates

chr1:+:84348950..84351492

Molecular Weight (calculated)

33740.1 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.459

Length

304 amino acids

Sequence
(BLAST)

001: MNEGGENDHG LYADVWSYLD VNDHQVGSGE TFEGNKLLDP TRSDTCKPLT IINEVVEVSD DVAKKRSPSN RKKNGKGIAE SNSGADGAEV RRASEHEIHI
101: WTERERRNKM RTLFETLHAL VPNLPAKADK STIVDKAVNH IQKLQNTFKK LESQKLERLK EYSIKLMSSQ KVGNSWEKYV GDQGSTNNST TITPITHGAS
201: PLIPTGFMTW SSLNVILNIC GEDAHISVCC PKKPGLFTII CYVLEKHKID IVFAQISSDQ FRSMFMIQAH AKGGSGVAQF SGAFTVEDMY KQAANEIILL
301: TTPK

Best Arabidopsis Sequence Match ( AT1G49770.1 )
(BLAST)

001: MTNAQELGQE GFMWGISNSD DSGGGCKRIE KEPLPSHPSH PSPEIQTTTV KKGKKRTKRN DKNHEEESPD HEIHIWTERE RRKKMRDMFS KLHALLPQLP
101: PKADKSTIVD EAVSSIKSLE QTLQKLEMQK LEKLQYSSAS TNTTPTTTFA YAPSSSSSPT ALLTPISNHP IDATATDSYP RAAFLADQVS SSSAAAANLP
201: YPCNDPIVNF DTWSSRNVVL TICGNEAFFN LCVPKHKPGV FTSVCYLFEK YNMEVLFANV SSNVFWSTYV IQAQVNPSCE NQLLGNGLGV VDVFKQVSQE
301: LVLYFSSL

Arabidopsis Description

BHLH95Transcription factor bHLH95 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.