Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09560 | Canola | cytosol | 95.74 | 95.74 |
| Bra032402.1-P | Field mustard | cytosol | 95.32 | 95.32 |
| CDY02306 | Canola | cytosol | 95.32 | 95.32 |
| PGSC0003DMT400010366 | Potato | cytosol | 69.36 | 73.09 |
| VIT_08s0056g00620.t01 | Wine grape | cytosol | 69.79 | 71.3 |
| Solyc09g048990.2.1 | Tomato | unclear | 37.45 | 70.97 |
| AT4G11150.1 | Thale cress | cytosol | 68.51 | 70.0 |
| KRH24417 | Soybean | cytosol | 67.23 | 69.3 |
| KRH29400 | Soybean | cytosol | 68.94 | 68.64 |
| Os05t0480700-01 | Rice | plasma membrane | 65.53 | 66.67 |
| HORVU1Hr1G069480.1 | Barley | cytosol | 65.53 | 66.38 |
| HORVU0Hr1G025810.2 | Barley | cytosol | 65.53 | 66.38 |
| Zm00001d038490_P001 | Maize | cytosol | 65.11 | 66.23 |
| OQU78193 | Sorghum | cytosol | 64.68 | 65.8 |
| TraesCS1B01G312000.1 | Wheat | cytosol | 64.68 | 65.8 |
| TraesCS1D01G301600.1 | Wheat | cytosol | 64.26 | 65.37 |
| AT1G64200.2 | Thale cress | cytosol | 63.83 | 63.29 |
| TraesCS1A01G302200.2 | Wheat | cytosol | 64.26 | 55.93 |
| CDX77585 | Canola | mitochondrion | 34.04 | 45.71 |
Protein Annotations
| MapMan:24.1.1.2.5 | Gene3D:3.30.2320.30 | EntrezGene:820003 | UniProt:A0A178VP35 | ProteinID:AAG51352.1 | ProteinID:AEE74646.1 |
| ArrayExpress:AT3G08560 | EnsemblPlantsGene:AT3G08560 | RefSeq:AT3G08560 | TAIR:AT3G08560 | RefSeq:AT3G08560-TAIR-G | EnsemblPlants:AT3G08560.1 |
| TAIR:AT3G08560.1 | InterPro:ATPase_E_C | InterPro:ATPase_V1_Esu | Unigene:At.40256 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0015991 |
| GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0033178 | GO:GO:0046961 | InterPro:IPR038495 |
| HAMAP:MF_00311 | RefSeq:NP_187468.1 | ProteinID:OAP06622.1 | PFAM:PF01991 | PO:PO:0001007 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0020099 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR12317 | PANTHER:PTHR12317:SF54 | UniProt:Q9C9Z8 | SUPFAM:SSF160527 | UniParc:UPI000009CA71 | Symbol:VHA-E2 |
| SEG:seg | : | : | : | : | : |
Description
VHA-E2VHA-E2 [Source:UniProtKB/TrEMBL;Acc:A0A178VP35]
Coordinates
chr3:+:2600091..2601907
Molecular Weight (calculated)
26854.4 Da
IEP (calculated)
9.694
GRAVY (calculated)
-0.657
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDADVSKQI QQMVRFIRQE AEEKANEISI SAEEEFNIER LQLLESAKRK LRQDYDRKLK QVDIRKRIDY STQLNASRIK YLQAQDDVVT AMKDSAAKDL
101: LRVSNDKNNY KKLLKSLIIE SLLRLKEPSV LLRCREMDKK VVESVIEDAK RQYAEKAKVG SPKITIDEKV FLPPPPNPKL PDSHDPHCSG GVVLASQDGK
201: IVCENTLDAR LDVAFRQKLP QIRTRLVGAP ETSRA
101: LRVSNDKNNY KKLLKSLIIE SLLRLKEPSV LLRCREMDKK VVESVIEDAK RQYAEKAKVG SPKITIDEKV FLPPPPNPKL PDSHDPHCSG GVVLASQDGK
201: IVCENTLDAR LDVAFRQKLP QIRTRLVGAP ETSRA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.