Factsheet for PGSC0003DMT400010366

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g048990.2.1	Tomato	unclear	53.36	95.97
VIT_08s0056g00620.t01	Wine grape	cytosol	75.78	73.48
AT3G08560.1	Thale cress	cytosol, nucleus, peroxisome	73.09	69.36
CDY09560	Canola	cytosol	72.65	68.94
Bra032402.1-P	Field mustard	cytosol	72.2	68.51
CDY02306	Canola	cytosol	72.2	68.51
Zm00001d038490_P001	Maize	cytosol	70.85	68.4
OQU78193	Sorghum	cytosol	70.85	68.4
PGSC0003DMT400014945	Potato	cytosol	73.09	67.63
KRH24417	Soybean	cytosol	69.06	67.54
KRH29400	Soybean	cytosol	69.96	66.1
Os05t0480700-01	Rice	plasma membrane	67.26	64.94
HORVU1Hr1G069480.1	Barley	cytosol	66.37	63.79
HORVU0Hr1G025810.2	Barley	cytosol	66.37	63.79
TraesCS1B01G312000.1	Wheat	cytosol	65.92	63.64
TraesCS1D01G301600.1	Wheat	cytosol	65.92	63.64
TraesCS1A01G302200.2	Wheat	cytosol	66.82	55.19
CDX77585	Canola	mitochondrion	29.6	37.71

Protein Annotations

MapMan:24.1.1.2.5	Gene3D:3.30.2320.30	InterPro:ATPase_E_C	InterPro:ATPase_V1_Esu	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0006810	GO:GO:0008150	GO:GO:0015991	GO:GO:0016020	GO:GO:0016787
GO:GO:0033178	GO:GO:0046961	InterPro:IPR038495	UniProt:M0ZXX3	HAMAP:MF_00311	PFAM:PF01991
EnsemblPlantsGene:PGSC0003DMG400004047	PGSC:PGSC0003DMG400004047	EnsemblPlants:PGSC0003DMT400010366	PANTHER:PTHR12317	PANTHER:PTHR12317:SF54	SUPFAM:SSF160527
UniParc:UPI0002965AA2	SEG:seg	:	:	:	:

Description

Vacuolar ATP synthase subunit E [Source:PGSC_GENE;Acc:PGSC0003DMG400004047]

Coordinates

chr9:-:19578549..19582727

Molecular Weight (calculated)

25432.8 Da

IEP (calculated)

9.097

GRAVY (calculated)

-0.562

Length

223 amino acids

Sequence
(BLAST)

001: MNDTDVSKQI QQMVRFIRQE AEEKANEISV SAEEEFQIEK LQLVEAEKKK VRQEYERKTK QVEVRKKIEY SMQLNASRIK VLQAQDDVVS GMKDSARKAL
101: LKISGEKNNY KKILRGLIVQ SLLRLKEPSL LLRCREMDVS LVKSVVEDAK KEYAEKAKVR APNVTIDNVY LPPPPNDADP HRASCSGGVV LASDDGKIVC
201: ENTLDARLDV VFRQKLPEVI YCK

Best Arabidopsis Sequence Match ( AT4G11150.1 )
(BLAST)

001: MNDGDVSRQI QQMVRFIRQE AEEKANEISV SAEEEFNIEK LQLVEAEKKK IRQDYEKKEK QADVRKKIDY SMQLNASRIK VLQAQDDIVN AMKDQAAKDL
101: LNVSRDEYAY KQLLKDLIVQ CLLRLKEPSV LLRCREEDLG LVEAVLDDAK EEYAGKAKVH APEVAVDTKI FLPPPPKSND PHGLHCSGGV VLASRDGKIV
201: CENTLDARLD VAFRMKLPVI RKSLFGQVTA

Arabidopsis Description

VHA-E1V-type proton ATPase subunit E1 [Source:UniProtKB/Swiss-Prot;Acc:Q39258]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.