Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
unclear:
26455813
|
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400010366 | Potato | cytosol | 95.97 | 53.36 |
| Solyc08g081910.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, nucleus | 79.03 | 42.42 |
| VIT_08s0056g00620.t01 | Wine grape | cytosol | 77.42 | 41.74 |
| Solyc12g056110.1.1 | Tomato | cytosol | 75.81 | 41.23 |
| Solyc08g008210.2.1 | Tomato | extracellular, nucleus | 79.03 | 40.66 |
| Zm00001d038490_P001 | Maize | cytosol | 70.97 | 38.1 |
| OQU78193 | Sorghum | cytosol | 70.97 | 38.1 |
| KRH24417 | Soybean | cytosol | 69.35 | 37.72 |
| AT3G08560.1 | Thale cress | cytosol, nucleus, peroxisome | 70.97 | 37.45 |
| CDY09560 | Canola | cytosol | 70.97 | 37.45 |
| HORVU0Hr1G025810.2 | Barley | cytosol | 69.35 | 37.07 |
| HORVU1Hr1G069480.1 | Barley | cytosol | 69.35 | 37.07 |
| Bra032402.1-P | Field mustard | cytosol | 70.16 | 37.02 |
| CDY02306 | Canola | cytosol | 70.16 | 37.02 |
| Os05t0480700-01 | Rice | plasma membrane | 68.55 | 36.8 |
| TraesCS1B01G312000.1 | Wheat | cytosol | 68.55 | 36.8 |
| TraesCS1D01G301600.1 | Wheat | cytosol | 68.55 | 36.8 |
| KRH29400 | Soybean | cytosol | 69.35 | 36.44 |
| TraesCS1A01G302200.2 | Wheat | cytosol | 70.16 | 32.22 |
| CDX77585 | Canola | mitochondrion | 27.42 | 19.43 |
Protein Annotations
| MapMan:24.1.1.2.5 | InterPro:ATPase_V1_Esu | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015991 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0033178 | GO:GO:0046961 |
| UniProt:K4CSZ7 | PFAM:PF01991 | PANTHER:PTHR12317 | PANTHER:PTHR12317:SF54 | EnsemblPlantsGene:Solyc09g048990.2 | EnsemblPlants:Solyc09g048990.2.1 |
| UniParc:UPI000276AD31 | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:34651744..34652583
Molecular Weight (calculated)
14435.5 Da
IEP (calculated)
10.054
GRAVY (calculated)
-0.778
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDTDVSKQI QQMVRFIRQE AEEKANEISV SAEEEFQIEK LQFVEAEKKK VRQEYERKTK QVEVRKKIEY SMQLNASRIK VLQAQDDVVS GMKESARKAL
101: LKISGEKNNY KKILRGLIVQ SVAT
101: LKISGEKNNY KKILRGLIVQ SVAT
001: MNDADVSKQI QQMVRFIRQE AEEKANEISI SAEEEFNIER LQLLESAKRK LRQDYDRKLK QVDIRKRIDY STQLNASRIK YLQAQDDVVT AMKDSAAKDL
101: LRVSNDKNNY KKLLKSLIIE SLLRLKEPSV LLRCREMDKK VVESVIEDAK RQYAEKAKVG SPKITIDEKV FLPPPPNPKL PDSHDPHCSG GVVLASQDGK
201: IVCENTLDAR LDVAFRQKLP QIRTRLVGAP ETSRA
101: LRVSNDKNNY KKLLKSLIIE SLLRLKEPSV LLRCREMDKK VVESVIEDAK RQYAEKAKVG SPKITIDEKV FLPPPPNPKL PDSHDPHCSG GVVLASQDGK
201: IVCENTLDAR LDVAFRQKLP QIRTRLVGAP ETSRA
Arabidopsis Description
VHA-E2VHA-E2 [Source:UniProtKB/TrEMBL;Acc:A0A178VP35]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.