CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29400	Soybean	cytosol	92.98	89.83
Solyc09g048990.2.1	Tomato	unclear	37.72	69.35
VIT_08s0056g00620.t01	Wine grape	cytosol	69.74	69.13
PGSC0003DMT400010366	Potato	cytosol	67.54	69.06
CDY09560	Canola	cytosol	69.3	67.23
AT3G08560.1	Thale cress	cytosol, nucleus, peroxisome	69.3	67.23
Os05t0480700-01	Rice	plasma membrane	67.98	67.1
KRH41272	Soybean	nucleus	67.98	66.81
KRH60001	Soybean	mitochondrion	67.98	66.81
Bra032402.1-P	Field mustard	cytosol	68.86	66.81
CDY02306	Canola	cytosol	68.86	66.81
TraesCS1B01G312000.1	Wheat	cytosol	67.54	66.67
TraesCS1D01G301600.1	Wheat	cytosol	67.11	66.23
HORVU0Hr1G025810.2	Barley	cytosol	67.11	65.95
HORVU1Hr1G069480.1	Barley	cytosol	67.11	65.95
KRH60005	Soybean	cytosol, endoplasmic reticulum, nucleus	67.11	65.11
OQU78193	Sorghum	cytosol	65.35	64.5
Zm00001d038490_P001	Maize	cytosol	65.35	64.5
KRH41277	Soybean	cytosol, endoplasmic reticulum	66.23	63.45
KRH60006	Soybean	cytosol, endoplasmic reticulum, nucleus	66.23	63.18
TraesCS1A01G302200.2	Wheat	cytosol	67.11	56.67
CDX77585	Canola	mitochondrion	26.32	34.29

Protein Annotations

EntrezGene:100779392	MapMan:24.1.1.2.5	Gene3D:3.30.2320.30	EMBL:ACUP02007175	InterPro:ATPase_E_C	InterPro:ATPase_V1_Esu
ncoils:Coil	EnsemblPlantsGene:GLYMA_12G040300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015991	GO:GO:0016020	GO:GO:0016787	GO:GO:0033178
GO:GO:0046961	UniProt:I1LQ04	InterPro:IPR038495	EnsemblPlants:KRH24417	ProteinID:KRH24417	ProteinID:KRH24417.1
HAMAP:MF_00311	PFAM:PF01991	PANTHER:PTHR12317	PANTHER:PTHR12317:SF54	SUPFAM:SSF160527	UniParc:UPI000233D5F4
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:2900579..2902979

Molecular Weight (calculated)

26245.9 Da

IEP (calculated)

9.780

GRAVY (calculated)

-0.632

Length

228 amino acids

Sequence
(BLAST)

001: MKDADVSRQI QQMIRFIRQE AEEKANEISV AAEEEFNIEK LQLLEAEKRK IRQEYERKAK QIDVRRKIEY STQLNAARIK VLQAQDDAVG AMKDAAKKGL
101: LRISNDKKVY RKLVKDMIVQ GLLRLREPSV LLRCRESDRK LVESLIEEAK KEYSEKANMQ APKIALDDRV YLPPSPKNSA VDSHEPYCTG GIVLASEDGK
201: IVLENTLDAR LDVIFRQKLP EVRKRLLG

Best Arabidopsis Sequence Match ( AT3G08560.1 )
(BLAST)

001: MNDADVSKQI QQMVRFIRQE AEEKANEISI SAEEEFNIER LQLLESAKRK LRQDYDRKLK QVDIRKRIDY STQLNASRIK YLQAQDDVVT AMKDSAAKDL
101: LRVSNDKNNY KKLLKSLIIE SLLRLKEPSV LLRCREMDKK VVESVIEDAK RQYAEKAKVG SPKITIDEKV FLPPPPNPKL PDSHDPHCSG GVVLASQDGK
201: IVCENTLDAR LDVAFRQKLP QIRTRLVGAP ETSRA

Arabidopsis Description

VHA-E2VHA-E2 [Source:UniProtKB/TrEMBL;Acc:A0A178VP35]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.