CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60001	Soybean	mitochondrion	90.76	93.1
KRH41272	Soybean	nucleus	90.76	93.1
KRH60005	Soybean	cytosol, endoplasmic reticulum, nucleus	91.18	92.34
KRH60006	Soybean	cytosol, endoplasmic reticulum, nucleus	92.02	91.63
VIT_02s0025g01000.t01	Wine grape	cytosol	80.25	83.04
GSMUA_Achr4P00970_001	Banana	cytosol	80.25	79.92
GSMUA_Achr4P08420_001	Banana	cytosol	76.89	79.57
Zm00001d011504_P003	Maize	cytosol	76.47	79.13
Os01t0659200-01	Rice	plasma membrane	76.47	79.13
Solyc08g081910.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus	76.47	78.79
EES01200	Sorghum	cytosol	75.63	78.26
Solyc12g056110.1.1	Tomato	cytosol	74.79	78.07
Zm00001d043991_P001	Maize	plasma membrane, plastid	75.21	77.83
GSMUA_Achr4P15600_001	Banana	cytosol	74.79	77.39
TraesCS3A01G238700.1	Wheat	cytosol, golgi, nucleus	72.27	75.77
HORVU3Hr1G059320.2	Barley	vacuole	71.85	75.33
TraesCS3D01G239100.1	Wheat	cytosol	71.85	75.33
Solyc08g008210.2.1	Tomato	extracellular, nucleus	76.05	75.1
PGSC0003DMT400014945	Potato	cytosol	76.05	75.1
Bra027752.1-P	Field mustard	cytosol	74.37	74.68
CDY38187	Canola	cytosol	74.37	74.68
AT4G11150.1	Thale cress	cytosol	71.85	74.35
CDX90773	Canola	cytosol	71.85	74.35
CDY68698	Canola	cytosol	71.43	73.91
CDY68201	Canola	cytosol	71.43	73.91
CDX86813	Canola	cytosol	71.01	73.48
CDY08365	Canola	cytosol	73.95	73.33
CDX94228	Canola	cytosol	70.59	73.04
CDY25274	Canola	cytosol	70.59	73.04
Bra033155.1-P	Field mustard	cytosol	70.59	73.04
TraesCS3B01G267400.1	Wheat	cytosol	71.43	71.43
Bra035248.1-P	Field mustard	cytosol	63.87	70.05
AT1G64200.2	Thale cress	cytosol	69.33	69.62
VIT_02s0025g00960.t01	Wine grape	cytosol	22.69	69.23
Zm00001d039330_P001	Maize	cytosol, plasma membrane	66.39	68.7
EES00037	Sorghum	cytosol	65.55	67.83
Os01t0222500-01	Rice	plasma membrane	64.29	66.23
KRH24417	Soybean	cytosol	63.45	66.23
TraesCS7A01G408700.1	Wheat	cytosol	63.87	66.09
KRH29400	Soybean	cytosol	64.29	64.83
TraesCS3A01G146600.2	Wheat	cytosol	63.03	63.29
TraesCS3B01G173900.2	Wheat	cytosol	63.03	63.29
TraesCS3D01G155400.2	Wheat	cytosol	63.03	63.29
Zm00001d017087_P001	Maize	cytosol	25.21	60.0
HORVU3Hr1G029880.8	Barley	cytosol	64.71	52.92
Bra000737.1-P	Field mustard	cytosol	69.33	38.28

Protein Annotations

EntrezGene:106794127	MapMan:24.1.1.2.5	Gene3D:3.30.2320.30	EMBL:ACUP02004759	InterPro:ATPase_E_C	InterPro:ATPase_V1_Esu
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G020600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015991	GO:GO:0016020	GO:GO:0016787	GO:GO:0033178
GO:GO:0046961	UniProt:I1KPH7	InterPro:IPR038495	EnsemblPlants:KRH41277	ProteinID:KRH41277	ProteinID:KRH41277.1
HAMAP:MF_00311	PFAM:PF01991	PANTHER:PTHR12317	PANTHER:PTHR12317:SF54	SUPFAM:SSF160527	UniParc:UPI0002337FC3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:1669387..1672525

Molecular Weight (calculated)

27572.1 Da

IEP (calculated)

6.753

GRAVY (calculated)

-0.551

Length

238 amino acids

Sequence
(BLAST)

001: MNDADVSKQI QQMVRFIRQE AEEKANEISV SAEEEFNIEK LQLVEAEKKK TRQEYERKER QVEIRKKIEY SMQLNASRIK VLQAQDDVIS SMKEAASKEL
101: LHVSHHHHLT LTHHDHVYRN LLKDLIIQCL LRLKEPSVLL RCRKDDLHLV EHVLDSAAQE YAEKVNVDPP EIIVDNQVYL PPGPHHHNSH DLYCSGGVVL
201: ASRDGKIVCE NTLDARLDVV FRKKLPEIRN QLFGQVVA

Best Arabidopsis Sequence Match ( AT1G64200.1 )
(BLAST)

001: MNDADASIQI QQMVRFIRQE AEEKANEISI SSEEEFNIEK LQLVEAEKKK IRQEYEKKEK QVDVRKKIDY SMQLNASRIK VLQAQDDIVN AMKEEAAKQL
101: LKVSQHGFFN HHHHQYKHLL KDLIVQCLLR LKEPAVLLRC REEDLDIVES MLDDASEEYC KKAKVHAPEI IVDKDIFLPP APSDDDPHAL SCAGGVVLAS
201: RDGKIVCENT LDARLEVAFR NKLPEIRKSL FGKVGAA

Arabidopsis Description

VHA-E3vacuolar H+-ATPase subunit E isoform 3 [Source:TAIR;Acc:AT1G64200]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.