Factsheet for Solyc08g081910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g056110.1.1	Tomato	cytosol	87.45	88.6
VIT_02s0025g01000.t01	Wine grape	cytosol	86.15	86.52
Solyc08g008210.2.1	Tomato	extracellular, nucleus	89.18	85.48
GSMUA_Achr4P08420_001	Banana	cytosol	82.68	83.04
GSMUA_Achr4P15600_001	Banana	cytosol	80.09	80.43
KRH41272	Soybean	nucleus	80.52	80.17
KRH60001	Soybean	mitochondrion	80.52	80.17
Solyc09g048990.2.1	Tomato	unclear	42.42	79.03
GSMUA_Achr4P00970_001	Banana	cytosol	81.39	78.66
KRH60005	Soybean	cytosol, endoplasmic reticulum, nucleus	79.65	78.3
Zm00001d011504_P003	Maize	cytosol	77.92	78.26
EES01200	Sorghum	cytosol	77.92	78.26
Zm00001d043991_P001	Maize	plasma membrane, plastid	77.49	77.83
TraesCS3A01G238700.1	Wheat	cytosol, golgi, nucleus	76.19	77.53
KRH60006	Soybean	cytosol, endoplasmic reticulum, nucleus	80.09	77.41
Os01t0659200-01	Rice	plasma membrane	77.06	77.39
HORVU3Hr1G059320.2	Barley	vacuole	75.76	77.09
TraesCS3D01G239100.1	Wheat	cytosol	75.76	77.09
AT4G11150.1	Thale cress	cytosol	76.19	76.52
KRH41277	Soybean	cytosol, endoplasmic reticulum	78.79	76.47
CDY38187	Canola	cytosol	78.36	76.37
Bra027752.1-P	Field mustard	cytosol	78.36	76.37
CDY08365	Canola	cytosol	78.36	75.42
CDY68201	Canola	cytosol	74.89	75.22
CDX90773	Canola	cytosol	74.89	75.22
TraesCS3B01G267400.1	Wheat	cytosol	77.06	74.79
CDY68698	Canola	cytosol	74.46	74.78
CDX94228	Canola	cytosol	74.46	74.78
CDY25274	Canola	cytosol	74.03	74.35
CDX86813	Canola	cytosol	74.03	74.35
Bra033155.1-P	Field mustard	cytosol	74.03	74.35
AT1G64200.2	Thale cress	cytosol	75.76	73.84
Bra035248.1-P	Field mustard	cytosol	66.67	70.97
Zm00001d039330_P001	Maize	cytosol, plasma membrane	69.7	70.0
EES00037	Sorghum	cytosol	68.83	69.13
Os01t0222500-01	Rice	plasma membrane	67.97	67.97
TraesCS7A01G408700.1	Wheat	cytosol	65.8	66.09
TraesCS3D01G155400.2	Wheat	cytosol	66.23	64.56
TraesCS3A01G146600.2	Wheat	cytosol	66.23	64.56
TraesCS3B01G173900.2	Wheat	cytosol	65.8	64.14
VIT_02s0025g00960.t01	Wine grape	cytosol	21.21	62.82
Zm00001d017087_P001	Maize	cytosol	26.41	61.0
HORVU3Hr1G029880.8	Barley	cytosol	66.67	52.92
Bra000737.1-P	Field mustard	cytosol	74.03	39.68

Protein Annotations

MapMan:24.1.1.2.5	Gene3D:3.30.2320.30	InterPro:ATPase_E_C	InterPro:ATPase_V1_Esu	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015991
GO:GO:0016020	GO:GO:0016787	GO:GO:0033178	GO:GO:0046961	InterPro:IPR038495	UniProt:K4CPI7
HAMAP:MF_00311	PFAM:PF01991	PANTHER:PTHR12317	PANTHER:PTHR12317:SF54	SUPFAM:SSF160527	EnsemblPlantsGene:Solyc08g081910.2
EnsemblPlants:Solyc08g081910.2.1	UniParc:UPI000276C2CC	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:64822688..64827931

Molecular Weight (calculated)

26394.8 Da

IEP (calculated)

6.791

GRAVY (calculated)

-0.469

Length

231 amino acids

Sequence
(BLAST)

001: MNDADVSKQI QQMVRFIRQE AEEKANEISV SAEEEFNIEK LQLVEAEKKK IRQEYERKEK QVDVRKKIEY SMQLNASRIK VLQAQDDLVC SMKEAASKEL
101: LNVSHHHNHH IYKKLLQALI VQSLLRLKEP SVLLRCREDD VPLVEDVLDA AKEEYAEKSQ VHAPEVIVDQ IYLPPAPSHH NAHGPSCSGG VVLASRDGKI
201: VCENTLDARL EVVFRKKLPE IRKCLFGQVA V

Best Arabidopsis Sequence Match ( AT1G64200.1 )
(BLAST)

001: MNDADASIQI QQMVRFIRQE AEEKANEISI SSEEEFNIEK LQLVEAEKKK IRQEYEKKEK QVDVRKKIDY SMQLNASRIK VLQAQDDIVN AMKEEAAKQL
101: LKVSQHGFFN HHHHQYKHLL KDLIVQCLLR LKEPAVLLRC REEDLDIVES MLDDASEEYC KKAKVHAPEI IVDKDIFLPP APSDDDPHAL SCAGGVVLAS
201: RDGKIVCENT LDARLEVAFR NKLPEIRKSL FGKVGAA

Arabidopsis Description

VHA-E3vacuolar H+-ATPase subunit E isoform 3 [Source:TAIR;Acc:AT1G64200]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.