CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41272	Soybean	nucleus	97.41	97.41
KRH60005	Soybean	cytosol, endoplasmic reticulum, nucleus	93.53	92.34
KRH60006	Soybean	cytosol, endoplasmic reticulum, nucleus	94.83	92.05
KRH41277	Soybean	cytosol, endoplasmic reticulum	93.1	90.76
VIT_02s0025g01000.t01	Wine grape	cytosol	84.05	84.78
GSMUA_Achr4P08420_001	Banana	cytosol	80.17	80.87
Solyc08g081910.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus	80.17	80.52
Os01t0659200-01	Rice	plasma membrane	78.45	79.13
Solyc12g056110.1.1	Tomato	cytosol	77.16	78.51
Zm00001d011504_P003	Maize	cytosol	77.59	78.26
EES01200	Sorghum	cytosol	77.59	78.26
GSMUA_Achr4P00970_001	Banana	cytosol	80.6	78.24
Zm00001d043991_P001	Maize	plasma membrane, plastid	77.16	77.83
GSMUA_Achr4P15600_001	Banana	cytosol	76.72	77.39
TraesCS3A01G238700.1	Wheat	cytosol, golgi, nucleus	74.14	75.77
AT4G11150.1	Thale cress	cytosol	75.0	75.65
Bra027752.1-P	Field mustard	cytosol	77.16	75.53
CDY38187	Canola	cytosol	77.16	75.53
Solyc08g008210.2.1	Tomato	extracellular, nucleus	78.45	75.52
PGSC0003DMT400014945	Potato	cytosol	78.45	75.52
HORVU3Hr1G059320.2	Barley	vacuole	73.71	75.33
TraesCS3D01G239100.1	Wheat	cytosol	73.71	75.33
CDX90773	Canola	cytosol	74.57	75.22
CDY68698	Canola	cytosol	74.14	74.78
CDY68201	Canola	cytosol	74.14	74.78
CDX86813	Canola	cytosol	73.71	74.35
CDY08365	Canola	cytosol	76.72	74.17
CDX94228	Canola	cytosol	73.28	73.91
CDY25274	Canola	cytosol	73.28	73.91
Bra033155.1-P	Field mustard	cytosol	73.28	73.91
TraesCS3B01G267400.1	Wheat	cytosol	73.71	71.85
VIT_02s0025g00960.t01	Wine grape	cytosol	24.14	71.79
Bra035248.1-P	Field mustard	cytosol	66.81	71.43
AT1G64200.2	Thale cress	cytosol	72.41	70.89
Zm00001d039330_P001	Maize	cytosol, plasma membrane	68.53	69.13
EES00037	Sorghum	cytosol	67.67	68.26
KRH24417	Soybean	cytosol	66.81	67.98
Os01t0222500-01	Rice	plasma membrane	66.81	67.1
KRH29400	Soybean	cytosol	67.67	66.53
TraesCS7A01G408700.1	Wheat	cytosol	65.52	66.09
TraesCS3A01G146600.2	Wheat	cytosol	65.52	64.14
TraesCS3B01G173900.2	Wheat	cytosol	65.09	63.71
TraesCS3D01G155400.2	Wheat	cytosol	65.09	63.71
Zm00001d017087_P001	Maize	cytosol	26.72	62.0
HORVU3Hr1G029880.8	Barley	cytosol	66.81	53.26
Bra000737.1-P	Field mustard	cytosol	72.41	38.98

Protein Annotations

MapMan:24.1.1.2.5	Gene3D:3.30.2320.30	EMBL:ACUP02003347	InterPro:ATPase_E_C	InterPro:ATPase_V1_Esu	ncoils:Coil
EnsemblPlantsGene:GLYMA_05G213800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015991	GO:GO:0016020	GO:GO:0016787	GO:GO:0033178	GO:GO:0046961
UniProt:I1K6C1	InterPro:IPR038495	EnsemblPlants:KRH60001	ProteinID:KRH60001	ProteinID:KRH60001.1	HAMAP:MF_00311
PFAM:PF01991	PANTHER:PTHR12317	PANTHER:PTHR12317:SF54	SUPFAM:SSF160527	UniParc:UPI00023396E1	:

Description

hypothetical protein

Coordinates

chr5:-:39514504..39518015

Molecular Weight (calculated)

26741.1 Da

IEP (calculated)

6.407

GRAVY (calculated)

-0.541

Length

232 amino acids

Sequence
(BLAST)

001: MNDADVSKQI QQMVRFIRQE AEEKANEISV SAEEEFNIEK LQLVEADKKK IRQEYERKER QVEIRKKIEY SMQLNASRIK VLQAQDDVIS SMKEAASKEL
101: LTVSHHHDDH VYRNLLKDLI VQCLLRLKEP SVLLRCRKDD LHLVENVLDS AAQEYAEKAN VDPPEIIVDN QVYLPPGPSR HNSHDLYCSG GVVLASRDGK
201: IVCENTLDAR LDVVFRKKLP EIRKQLFGQI VA

Best Arabidopsis Sequence Match ( AT4G11150.1 )
(BLAST)

001: MNDGDVSRQI QQMVRFIRQE AEEKANEISV SAEEEFNIEK LQLVEAEKKK IRQDYEKKEK QADVRKKIDY SMQLNASRIK VLQAQDDIVN AMKDQAAKDL
101: LNVSRDEYAY KQLLKDLIVQ CLLRLKEPSV LLRCREEDLG LVEAVLDDAK EEYAGKAKVH APEVAVDTKI FLPPPPKSND PHGLHCSGGV VLASRDGKIV
201: CENTLDARLD VAFRMKLPVI RKSLFGQVTA

Arabidopsis Description

VHA-E1V-type proton ATPase subunit E1 [Source:UniProtKB/Swiss-Prot;Acc:Q39258]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.