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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:vacuole
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 vacuole: 16581873
vacuole: 19391183
plasma membrane: 29385242
msms PMID: 16581873 doi
A Endler, S Meyer, S Schelbert, T Schneider, W Weschke, SW Peters, F Keller, S Baginsky, E Martinoia, UG Schmidt
University of Zurich, Institute of Plant Biology, CH-8008 Zurich, Switzerland.
msms PMID: 29385242 doi
K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
msms PMID: 19391183 doi
T Schneider, M Schellenberg, S Meyer, F Keller, P Gehrig, K Riedel, Y Lee, L Eberl, E Martinoia
Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, Zurich, Switzerland. Thomas.Schneider@botinst.uzh.ch
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G238700.1 Wheat cytosol, golgi, nucleus 98.68 98.68
TraesCS3D01G239100.1 Wheat cytosol 97.8 97.8
TraesCS3B01G267400.1 Wheat cytosol 95.59 91.18
EES01200 Sorghum cytosol 88.99 87.83
Zm00001d043991_P001 Maize plasma membrane, plastid 88.11 86.96
Os01t0659200-01 Rice plasma membrane 88.11 86.96
Zm00001d011504_P003 Maize cytosol 87.67 86.52
Solyc08g081910.2.1 Tomato cytosol, endoplasmic reticulum, extracellular, nucleus 77.09 75.76
Solyc12g056110.1.1 Tomato cytosol 74.89 74.56
KRH41272 Soybean nucleus 75.77 74.14
KRH60001 Soybean mitochondrion 75.33 73.71
Solyc08g008210.2.1 Tomato extracellular, nucleus 77.97 73.44
KRH60005 Soybean cytosol, endoplasmic reticulum, nucleus 75.77 73.19
PGSC0003DMT400014945 Potato cytosol 77.53 73.03
CDY38187 Canola cytosol 75.77 72.57
Bra027752.1-P Field mustard cytosol 75.77 72.57
KRH60006 Soybean cytosol, endoplasmic reticulum, nucleus 76.21 72.38
AT4G11150.1 Thale cress cytosol 73.13 72.17
CDY68201 Canola cytosol 73.13 72.17
KRH41277 Soybean cytosol, endoplasmic reticulum 75.33 71.85
CDY68698 Canola cytosol 72.69 71.74
CDX90773 Canola cytosol 72.69 71.74
CDX86813 Canola cytosol 72.69 71.74
CDY25274 Canola cytosol 72.25 71.3
Bra033155.1-P Field mustard cytosol 72.25 71.3
CDY08365 Canola cytosol 75.33 71.25
AT1G64200.2 Thale cress cytosol 74.01 70.89
CDX94228 Canola cytosol 71.81 70.87
Bra035248.1-P Field mustard cytosol 65.2 68.2
VIT_02s0025g00960.t01 Wine grape cytosol 21.59 62.82
HORVU1Hr1G069480.1 Barley cytosol 63.44 62.07
HORVU0Hr1G025810.2 Barley cytosol 63.44 62.07
HORVU3Hr1G029880.8 Barley cytosol 67.84 52.92
Bra000737.1-P Field mustard cytosol 71.81 37.82
Protein Annotations
MapMan:24.1.1.2.5Gene3D:3.30.2320.30EMBL:AK354809EMBL:AK360180EMBL:AK369569InterPro:ATPase_E_C
InterPro:ATPase_V1_Esuncoils:CoilUniProt:F2CT57GO:GO:0003674GO:GO:0003824GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015991GO:GO:0016020GO:GO:0016787
GO:GO:0033178GO:GO:0046961EnsemblPlantsGene:HORVU3Hr1G059320EnsemblPlants:HORVU3Hr1G059320.2InterPro:IPR038495HAMAP:MF_00311
PFAM:PF01991PANTHER:PTHR12317PANTHER:PTHR12317:SF54SUPFAM:SSF160527UniParc:UPI00000A26A8:
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CT57]
Coordinates
chrchr3H:+:449662731..449666771
Molecular Weight (calculated)
26262.6 Da
IEP (calculated)
7.082
GRAVY (calculated)
-0.646
Length
227 amino acids
Sequence
(BLAST)
001: MNDTDVSRQI QQMVRFIRQE AEEKAGEISV SAEEEFNIEK LQLVEAEKKK IRQEYERKEK QVDVRKKIEY SMQLNASRIK VLQAQDDLVN KMKEDAMKEL
101: LNISSNHHEY RNLLKELVVQ GLLRLKEPAV LLRCRKEDHH NVESVLHSAK NEYASKADVH EPEILVDHSV YLPPSPSHDD KHGQICHGGV VLASRDGKIV
201: FENTVDARLE VVFRKKLPEI RKLLVAA
Best Arabidopsis Sequence Match ( AT4G11150.1 )
(BLAST)
001: MNDGDVSRQI QQMVRFIRQE AEEKANEISV SAEEEFNIEK LQLVEAEKKK IRQDYEKKEK QADVRKKIDY SMQLNASRIK VLQAQDDIVN AMKDQAAKDL
101: LNVSRDEYAY KQLLKDLIVQ CLLRLKEPSV LLRCREEDLG LVEAVLDDAK EEYAGKAKVH APEVAVDTKI FLPPPPKSND PHGLHCSGGV VLASRDGKIV
201: CENTLDARLD VAFRMKLPVI RKSLFGQVTA
Arabidopsis Description
VHA-E1V-type proton ATPase subunit E1 [Source:UniProtKB/Swiss-Prot;Acc:Q39258]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.