Factsheet for Solyc08g008210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 20496099
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014945	Potato	cytosol	98.34	98.34
Solyc08g081910.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus	85.48	89.18
Solyc12g056110.1.1	Tomato	cytosol	83.4	88.16
VIT_02s0025g01000.t01	Wine grape	cytosol	82.16	86.09
GSMUA_Achr4P08420_001	Banana	cytosol	79.67	83.48
GSMUA_Achr4P15600_001	Banana	cytosol	77.59	81.3
GSMUA_Achr4P00970_001	Banana	cytosol	78.84	79.5
EES01200	Sorghum	cytosol	75.52	79.13
Solyc09g048990.2.1	Tomato	unclear	40.66	79.03
KRH60005	Soybean	cytosol, endoplasmic reticulum, nucleus	76.76	78.72
Zm00001d043991_P001	Maize	plasma membrane, plastid	75.1	78.7
Zm00001d011504_P003	Maize	cytosol	75.1	78.7
KRH60001	Soybean	mitochondrion	75.52	78.45
KRH41272	Soybean	nucleus	75.52	78.45
TraesCS3A01G238700.1	Wheat	cytosol, golgi, nucleus	73.86	78.41
KRH60006	Soybean	cytosol, endoplasmic reticulum, nucleus	77.59	78.24
TraesCS3D01G239100.1	Wheat	cytosol	73.44	77.97
HORVU3Hr1G059320.2	Barley	vacuole	73.44	77.97
Os01t0659200-01	Rice	plasma membrane	74.27	77.83
CDY38187	Canola	cytosol	76.35	77.64
Bra027752.1-P	Field mustard	cytosol	76.35	77.64
CDY08365	Canola	cytosol	75.93	76.25
KRH41277	Soybean	cytosol, endoplasmic reticulum	75.1	76.05
AT4G11150.1	Thale cress	cytosol	72.2	75.65
TraesCS3B01G267400.1	Wheat	cytosol	74.69	75.63
CDY68201	Canola	cytosol	71.78	75.22
AT1G64200.2	Thale cress	cytosol	73.44	74.68
CDY68698	Canola	cytosol	70.95	74.35
CDX86813	Canola	cytosol	70.95	74.35
CDX90773	Canola	cytosol	70.95	74.35
CDX94228	Canola	cytosol	70.54	73.91
Bra033155.1-P	Field mustard	cytosol	70.12	73.48
CDY25274	Canola	cytosol	70.12	73.48
Bra035248.1-P	Field mustard	cytosol	64.32	71.43
Zm00001d039330_P001	Maize	cytosol, plasma membrane	67.22	70.43
EES00037	Sorghum	cytosol	66.81	70.0
Os01t0222500-01	Rice	plasma membrane	65.15	67.97
TraesCS7A01G408700.1	Wheat	cytosol	63.07	66.09
TraesCS3A01G146600.2	Wheat	cytosol	63.9	64.98
TraesCS3D01G155400.2	Wheat	cytosol	63.49	64.56
TraesCS3B01G173900.2	Wheat	cytosol	63.07	64.14
VIT_02s0025g00960.t01	Wine grape	cytosol	20.33	62.82
Zm00001d017087_P001	Maize	cytosol	25.73	62.0
HORVU3Hr1G029880.8	Barley	cytosol	63.9	52.92
Bra000737.1-P	Field mustard	cytosol	70.12	39.21

Protein Annotations

MapMan:24.1.1.2.5	Gene3D:3.30.2320.30	InterPro:ATPase_E_C	InterPro:ATPase_V1_Esu	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015991
GO:GO:0016020	GO:GO:0016787	GO:GO:0033178	GO:GO:0046961	InterPro:IPR038495	UniProt:K4CIV5
HAMAP:MF_00311	PFAM:PF01991	PANTHER:PTHR12317	PANTHER:PTHR12317:SF54	SUPFAM:SSF160527	EnsemblPlantsGene:Solyc08g008210.2
EnsemblPlants:Solyc08g008210.2.1	UniParc:UPI000276AC65	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:2662300..2667303

Molecular Weight (calculated)

27607.4 Da

IEP (calculated)

7.103

GRAVY (calculated)

-0.488

Length

241 amino acids

Sequence
(BLAST)

001: MNDADVSKQI QQMVRFIRQE AEEKANEISV SAEEEFNIEK LQLVEAEKKK IRQEYERKEK QVDVRKKIEY SMQLNASRIK VLQAQDDLVN TMKEAAAKEL
101: LNVSHHEHGI IDSILHHHHG GYKKLLHDLI VQSLLRLKEP CVLLRCRKHD VHLVEHVLEG VKEEYAEKAS VHQPEIIVDE IHLPPAPSHH NMHGPSCSGG
201: VVLASRDGKI VCENTLDARL EVVFRKKLPE IRKCLFGQVA A

Best Arabidopsis Sequence Match ( AT1G64200.1 )
(BLAST)

001: MNDADASIQI QQMVRFIRQE AEEKANEISI SSEEEFNIEK LQLVEAEKKK IRQEYEKKEK QVDVRKKIDY SMQLNASRIK VLQAQDDIVN AMKEEAAKQL
101: LKVSQHGFFN HHHHQYKHLL KDLIVQCLLR LKEPAVLLRC REEDLDIVES MLDDASEEYC KKAKVHAPEI IVDKDIFLPP APSDDDPHAL SCAGGVVLAS
201: RDGKIVCENT LDARLEVAFR NKLPEIRKSL FGKVGAA

Arabidopsis Description

VHA-E3vacuolar H+-ATPase subunit E isoform 3 [Source:TAIR;Acc:AT1G64200]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.