CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60006	Soybean	cytosol, endoplasmic reticulum, nucleus	97.45	95.82
KRH60001	Soybean	mitochondrion	92.34	93.53
KRH41272	Soybean	nucleus	92.34	93.53
KRH41277	Soybean	cytosol, endoplasmic reticulum	92.34	91.18
VIT_02s0025g01000.t01	Wine grape	cytosol	82.13	83.91
GSMUA_Achr4P08420_001	Banana	cytosol	78.3	80.0
Solyc08g081910.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus	78.3	79.65
Os01t0659200-01	Rice	plasma membrane	77.02	78.7
Zm00001d011504_P003	Maize	cytosol	76.6	78.26
GSMUA_Achr4P15600_001	Banana	cytosol	76.6	78.26
EES01200	Sorghum	cytosol	76.6	78.26
Solyc12g056110.1.1	Tomato	cytosol	75.74	78.07
Zm00001d043991_P001	Maize	plasma membrane, plastid	76.17	77.83
GSMUA_Achr4P00970_001	Banana	cytosol	79.15	77.82
Solyc08g008210.2.1	Tomato	extracellular, nucleus	78.72	76.76
PGSC0003DMT400014945	Potato	cytosol	78.72	76.76
TraesCS3A01G238700.1	Wheat	cytosol, golgi, nucleus	73.62	76.21
HORVU3Hr1G059320.2	Barley	vacuole	73.19	75.77
TraesCS3D01G239100.1	Wheat	cytosol	73.19	75.77
CDX90773	Canola	cytosol	73.62	75.22
CDY68698	Canola	cytosol	73.19	74.78
CDY68201	Canola	cytosol	73.19	74.78
Bra027752.1-P	Field mustard	cytosol	75.32	74.68
CDY38187	Canola	cytosol	75.32	74.68
CDX94228	Canola	cytosol	72.34	73.91
CDX86813	Canola	cytosol	72.34	73.91
AT4G11150.1	Thale cress	cytosol	72.34	73.91
CDY25274	Canola	cytosol	72.34	73.91
Bra033155.1-P	Field mustard	cytosol	72.34	73.91
CDY08365	Canola	cytosol	74.89	73.33
TraesCS3B01G267400.1	Wheat	cytosol	73.62	72.69
VIT_02s0025g00960.t01	Wine grape	cytosol	23.83	71.79
AT1G64200.2	Thale cress	cytosol	71.49	70.89
Bra035248.1-P	Field mustard	cytosol	65.11	70.51
Zm00001d039330_P001	Maize	cytosol, plasma membrane	66.81	68.26
EES00037	Sorghum	cytosol	65.96	67.39
KRH24417	Soybean	cytosol	65.11	67.11
Os01t0222500-01	Rice	plasma membrane	64.68	65.8
KRH29400	Soybean	cytosol	65.96	65.68
TraesCS7A01G408700.1	Wheat	cytosol	63.83	65.22
TraesCS3A01G146600.2	Wheat	cytosol	64.26	63.71
TraesCS3B01G173900.2	Wheat	cytosol	63.83	63.29
TraesCS3D01G155400.2	Wheat	cytosol	63.83	63.29
Zm00001d017087_P001	Maize	cytosol	25.96	61.0
HORVU3Hr1G029880.8	Barley	cytosol	65.11	52.58
Bra000737.1-P	Field mustard	cytosol	71.49	38.98

Protein Annotations

MapMan:24.1.1.2.5	Gene3D:3.30.2320.30	EMBL:ACUP02003347	InterPro:ATPase_E_C	InterPro:ATPase_V1_Esu	ncoils:Coil
EnsemblPlantsGene:GLYMA_05G214100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015991	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0033178
GO:GO:0046961	UniProt:I1K6B8	InterPro:IPR038495	EnsemblPlants:KRH60005	ProteinID:KRH60005	ProteinID:KRH60005.1
HAMAP:MF_00311	PFAM:PF01991	PANTHER:PTHR12317	PANTHER:PTHR12317:SF54	SUPFAM:SSF160527	UniParc:UPI00023396E2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:39524090..39527182

Molecular Weight (calculated)

27307.7 Da

IEP (calculated)

6.705

GRAVY (calculated)

-0.631

Length

235 amino acids

Sequence
(BLAST)

001: MNDADVSKQI QQMVRFIRQE AEEKANEISV SAEEEFNIEK LQLVEADKKK IRQEYERKER QVEIRKKIEY SMQLNASRIK VLQAQDDVIS SMKEAASKEL
101: LNVSHHHHLN LLSHHHHEYR NLLKDLIVQC LLRLKEPSVL LRCRKDDLHL VEHELDSAAQ EYAEKANVDP PEIIVDNQVY LPPGPTHHNS HDLYCSGGVV
201: LASRDGKIVC ENTLDARLDV VFRKKLPEIR RQLFG

Best Arabidopsis Sequence Match ( AT1G64200.1 )
(BLAST)

001: MNDADASIQI QQMVRFIRQE AEEKANEISI SSEEEFNIEK LQLVEAEKKK IRQEYEKKEK QVDVRKKIDY SMQLNASRIK VLQAQDDIVN AMKEEAAKQL
101: LKVSQHGFFN HHHHQYKHLL KDLIVQCLLR LKEPAVLLRC REEDLDIVES MLDDASEEYC KKAKVHAPEI IVDKDIFLPP APSDDDPHAL SCAGGVVLAS
201: RDGKIVCENT LDARLEVAFR NKLPEIRKSL FGKVGAA

Arabidopsis Description

VHA-E3vacuolar H+-ATPase subunit E isoform 3 [Source:TAIR;Acc:AT1G64200]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.