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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 18557835
vacuole: 18557835
plasma membrane: 19526560
nucleus: 19621931
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 19526560 doi
Y Cheng, Y Qi, Q Zhu, X Chen, N Wang, X Zhao, H Chen, X Cui, L Xu, W Zhang
Department of Biochemistry and Molecular Biology, College of Life Science, Nanjing Agricultural University, Nanjing, Jiangsu, PR China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d043991_P001 Maize plasma membrane, plastid 90.0 90.0
EES01200 Sorghum cytosol 89.57 89.57
Zm00001d011504_P003 Maize cytosol 88.7 88.7
TraesCS3A01G238700.1 Wheat cytosol, golgi, nucleus 87.39 88.55
TraesCS3D01G239100.1 Wheat cytosol 86.96 88.11
HORVU3Hr1G059320.2 Barley vacuole 86.96 88.11
TraesCS3B01G267400.1 Wheat cytosol 85.65 82.77
KRH60001 Soybean mitochondrion 79.13 78.45
KRH41272 Soybean nucleus 78.26 77.59
Solyc08g081910.2.1 Tomato cytosol, endoplasmic reticulum, extracellular, nucleus 77.39 77.06
KRH60005 Soybean cytosol, endoplasmic reticulum, nucleus 78.7 77.02
CDY38187 Canola cytosol 79.13 76.79
Bra027752.1-P Field mustard cytosol 79.13 76.79
KRH60006 Soybean cytosol, endoplasmic reticulum, nucleus 79.57 76.57
KRH41277 Soybean cytosol, endoplasmic reticulum 79.13 76.47
Solyc12g056110.1.1 Tomato cytosol 75.22 75.88
CDY08365 Canola cytosol 78.7 75.42
AT4G11150.1 Thale cress cytosol 74.78 74.78
CDX90773 Canola cytosol 74.35 74.35
CDX86813 Canola cytosol 74.35 74.35
CDY68698 Canola cytosol 74.35 74.35
CDY68201 Canola cytosol 74.35 74.35
Solyc08g008210.2.1 Tomato extracellular, nucleus 77.83 74.27
PGSC0003DMT400014945 Potato cytosol 77.39 73.86
CDY25274 Canola cytosol 73.04 73.04
Bra033155.1-P Field mustard cytosol 73.04 73.04
CDX94228 Canola cytosol 72.61 72.61
AT1G64200.2 Thale cress cytosol 74.78 72.57
Bra035248.1-P Field mustard cytosol 66.52 70.51
Os01t0222500-01 Rice plasma membrane 70.0 69.7
Os05t0480700-01 Rice plasma membrane 68.7 68.4
VIT_02s0025g00960.t01 Wine grape cytosol 22.17 65.38
Bra000737.1-P Field mustard cytosol 72.61 38.75
Protein Annotations
MapMan:24.1.1.2.5Gene3D:3.30.2320.30EntrezGene:4327166EMBL:AK071200InterPro:ATPase_E_CInterPro:ATPase_V1_Esu
ProteinID:BAB85263.1ProteinID:BAF05681.1ProteinID:BAS73522.1ncoils:CoilProteinID:EAZ12968.1GO:GO:0003674
GO:GO:0003824GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015991
GO:GO:0016020GO:GO:0016787GO:GO:0033178GO:GO:0046961InterPro:IPR038495HAMAP:MF_00311
EnsemblPlantsGene:Os01g0659200EnsemblPlants:Os01t0659200-01PFAM:PF01991PANTHER:PTHR12317PANTHER:PTHR12317:SF54UniProt:Q8SA35
SUPFAM:SSF160527UniParc:UPI000009E2F5RefSeq:XP_015621799.1SEG:seg::
Description
V-ATPASE SUBUNIT ESimilar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit). (Os01t0659200-01)
Coordinates
chr1:+:26811872..26816519
Molecular Weight (calculated)
26631.0 Da
IEP (calculated)
7.418
GRAVY (calculated)
-0.643
Length
230 amino acids
Sequence
(BLAST)
001: MNDADVAKQI QQMVRFIRQE AEEKASEISV SAEEEFNIEK LQLVEAEKKK IRQEYERKEK QVEVRKKIEY SMQLNASRIK VLQAQDDLVN SMKEDATKQL
101: LRVSHNHHEY KNLLKELVVQ GLLRLKEPAV LLRCRKEDHH HVESVLHSAK NEYASKAEVH HPEILVDHDV YLPPSPSSHD SHERFCSGGV VLASRDGKIV
201: CENTLDARLE VVFRKKLPEI RKLLFGQVTA
Best Arabidopsis Sequence Match ( AT1G64200.1 )
(BLAST)
001: MNDADASIQI QQMVRFIRQE AEEKANEISI SSEEEFNIEK LQLVEAEKKK IRQEYEKKEK QVDVRKKIDY SMQLNASRIK VLQAQDDIVN AMKEEAAKQL
101: LKVSQHGFFN HHHHQYKHLL KDLIVQCLLR LKEPAVLLRC REEDLDIVES MLDDASEEYC KKAKVHAPEI IVDKDIFLPP APSDDDPHAL SCAGGVVLAS
201: RDGKIVCENT LDARLEVAFR NKLPEIRKSL FGKVGAA
Arabidopsis Description
VHA-E3vacuolar H+-ATPase subunit E isoform 3 [Source:TAIR;Acc:AT1G64200]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.