Factsheet for TraesCS3A01G238700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G239100.1	Wheat	cytosol	99.12	99.12
HORVU3Hr1G059320.2	Barley	vacuole	98.68	98.68
TraesCS3B01G267400.1	Wheat	cytosol	96.92	92.44
EES01200	Sorghum	cytosol	89.43	88.26
Zm00001d043991_P001	Maize	plasma membrane, plastid	88.55	87.39
Os01t0659200-01	Rice	plasma membrane	88.55	87.39
Zm00001d011504_P003	Maize	cytosol	88.11	86.96
Solyc08g081910.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus	77.53	76.19
Solyc12g056110.1.1	Tomato	cytosol	75.33	75.0
KRH41272	Soybean	nucleus	76.21	74.57
KRH60001	Soybean	mitochondrion	75.77	74.14
Solyc08g008210.2.1	Tomato	extracellular, nucleus	78.41	73.86
KRH60005	Soybean	cytosol, endoplasmic reticulum, nucleus	76.21	73.62
PGSC0003DMT400014945	Potato	cytosol	77.97	73.44
KRH60006	Soybean	cytosol, endoplasmic reticulum, nucleus	76.65	72.8
CDY38187	Canola	cytosol	75.77	72.57
Bra027752.1-P	Field mustard	cytosol	75.77	72.57
KRH41277	Soybean	cytosol, endoplasmic reticulum	75.77	72.27
CDY68201	Canola	cytosol	73.13	72.17
CDY68698	Canola	cytosol	72.69	71.74
CDX90773	Canola	cytosol	72.69	71.74
CDX86813	Canola	cytosol	72.69	71.74
AT4G11150.1	Thale cress	cytosol	72.69	71.74
CDY08365	Canola	cytosol	75.33	71.25
CDY25274	Canola	cytosol	71.81	70.87
Bra033155.1-P	Field mustard	cytosol	71.81	70.87
AT1G64200.2	Thale cress	cytosol	73.57	70.46
CDX94228	Canola	cytosol	71.37	70.43
Bra035248.1-P	Field mustard	cytosol	65.2	68.2
TraesCS7A01G408700.1	Wheat	cytosol	68.28	67.39
TraesCS3A01G146600.2	Wheat	cytosol	67.84	64.98
VIT_02s0025g00960.t01	Wine grape	cytosol	21.59	62.82
TraesCS1A01G302200.2	Wheat	cytosol	63.44	53.33
Bra000737.1-P	Field mustard	cytosol	71.81	37.82

Protein Annotations

MapMan:24.1.1.2.5	Gene3D:3.30.2320.30	InterPro:ATPase_E_C	InterPro:ATPase_V1_Esu	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015991
GO:GO:0016020	GO:GO:0016787	GO:GO:0033178	GO:GO:0046961	InterPro:IPR038495	HAMAP:MF_00311
PFAM:PF01991	PANTHER:PTHR12317	PANTHER:PTHR12317:SF54	SUPFAM:SSF160527	EnsemblPlantsGene:TraesCS3A01G238700	EnsemblPlants:TraesCS3A01G238700.1

Description

No Description!

Coordinates

chr3A:+:446474893..446479927

Molecular Weight (calculated)

26177.5 Da

IEP (calculated)

6.866

GRAVY (calculated)

-0.628

Length

227 amino acids

Sequence
(BLAST)

001: MNDTDVSKQI QQMVRFIRQE AEEKAGEISV SAEEEFNIEK LQLVEAEKKK IRQEYERKEK QVDVRKKIEY SMQLNASRIK VLQAQDDLVN KMKEDAMKEL
101: LNISSNHHEY RNLLKELVVQ GLLRLKEPAV LLRCRKEDHH NVESVLHSAK NEYASKADVH EPEILVDHSV YLPPSPSHGD EHGQICHGGV VLASRDGKIV
201: FENTVDARLE VVFRKKLPEI RKLLVAA

Best Arabidopsis Sequence Match ( AT4G11150.1 )
(BLAST)

001: MNDGDVSRQI QQMVRFIRQE AEEKANEISV SAEEEFNIEK LQLVEAEKKK IRQDYEKKEK QADVRKKIDY SMQLNASRIK VLQAQDDIVN AMKDQAAKDL
101: LNVSRDEYAY KQLLKDLIVQ CLLRLKEPSV LLRCREEDLG LVEAVLDDAK EEYAGKAKVH APEVAVDTKI FLPPPPKSND PHGLHCSGGV VLASRDGKIV
201: CENTLDARLD VAFRMKLPVI RKSLFGQVTA

Arabidopsis Description

VHA-E1V-type proton ATPase subunit E1 [Source:UniProtKB/Swiss-Prot;Acc:Q39258]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.