Factsheet for VIT_08s0056g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g048990.2.1	Tomato	unclear	41.74	77.42
PGSC0003DMT400010366	Potato	cytosol	73.48	75.78
VIT_02s0025g01000.t01	Wine grape	cytosol	75.65	75.65
OQU78193	Sorghum	cytosol	72.61	72.29
Os05t0480700-01	Rice	plasma membrane	72.17	71.86
Zm00001d038490_P001	Maize	cytosol	71.3	71.0
CDY09560	Canola	cytosol	72.17	70.64
CDY02306	Canola	cytosol	71.74	70.21
Bra032402.1-P	Field mustard	cytosol	71.74	70.21
AT3G08560.1	Thale cress	cytosol, nucleus, peroxisome	71.3	69.79
KRH24417	Soybean	cytosol	69.13	69.74
TraesCS1B01G312000.1	Wheat	cytosol	70.0	69.7
KRH29400	Soybean	cytosol	71.3	69.49
HORVU1Hr1G069480.1	Barley	cytosol	70.0	69.4
HORVU0Hr1G025810.2	Barley	cytosol	70.0	69.4
TraesCS1D01G301600.1	Wheat	cytosol	69.57	69.26
TraesCS1A01G302200.2	Wheat	cytosol	70.0	59.63
VIT_02s0025g00960.t01	Wine grape	cytosol	18.7	55.13
CDX77585	Canola	mitochondrion	26.96	35.43

Protein Annotations

EntrezGene:100248521	wikigene:100248521	MapMan:24.1.1.2.5	Gene3D:3.30.2320.30	InterPro:ATPase_E_C	InterPro:ATPase_V1_Esu
ProteinID:CCB55964	ProteinID:CCB55964.1	ncoils:Coil	UniProt:F6HMT9	EMBL:FN595995	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0006810	GO:GO:0008150	GO:GO:0015991	GO:GO:0016020	GO:GO:0016787
GO:GO:0033178	GO:GO:0046961	InterPro:IPR038495	EntrezGene:LOC100248521	wikigene:LOC100248521	HAMAP:MF_00311
PFAM:PF01991	PANTHER:PTHR12317	PANTHER:PTHR12317:SF54	SUPFAM:SSF160527	TIGR:TC58896	UniParc:UPI00015CB506
ArrayExpress:VIT_08s0056g00620	EnsemblPlantsGene:VIT_08s0056g00620	EnsemblPlants:VIT_08s0056g00620.t01	unigene:Vvi.8990	RefSeq:XP_002270168	RefSeq:XP_002270168.1

Description

No Description!

Coordinates

chr8:-:896434..901921

Molecular Weight (calculated)

26033.7 Da

IEP (calculated)

6.556

GRAVY (calculated)

-0.321

Length

230 amino acids

Sequence
(BLAST)

001: MNDADVSRQI QQMVRFILQE AEEKANEISV SAEEEFNIEK LQLVEAEKKK IRQEYERKAK QVEIRRKIEY SMQLNASRIK VLQAQDDLVN SMKEATGKEL
101: LRVSDDTNGY KMLLKGLIVQ SLLRLKEPAV LLRCREIDLG PVESVLGEAK QEYADKAKVH VPKVTIDNLV YLPPPPSSVD SHSLFCSGGV VLASQDGKIV
201: CENTLDARLD VVFRQKLPEI RKLLFGQVVA

Best Arabidopsis Sequence Match ( AT4G11150.1 )
(BLAST)

001: MNDGDVSRQI QQMVRFIRQE AEEKANEISV SAEEEFNIEK LQLVEAEKKK IRQDYEKKEK QADVRKKIDY SMQLNASRIK VLQAQDDIVN AMKDQAAKDL
101: LNVSRDEYAY KQLLKDLIVQ CLLRLKEPSV LLRCREEDLG LVEAVLDDAK EEYAGKAKVH APEVAVDTKI FLPPPPKSND PHGLHCSGGV VLASRDGKIV
201: CENTLDARLD VAFRMKLPVI RKSLFGQVTA

Arabidopsis Description

VHA-E1V-type proton ATPase subunit E1 [Source:UniProtKB/Swiss-Prot;Acc:Q39258]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.