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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi

Predictor Summary:
  • endoplasmic reticulum 3
  • golgi 3
  • extracellular 3
  • plastid 2
  • peroxisome 1
  • vacuole 2
  • plasma membrane 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plastid, secretory
Any Predictor:cytosol, peroxisome, plastid, secretory
BaCelLo:endoplasmic reticulum, extracellular, golgi
iPSORT:plastid
MultiLoc:peroxisome
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34992 Canola cytosol, plastid, vacuole 90.89 92.33
CDY39026 Canola cytosol, plastid, vacuole 90.89 92.33
Bra021218.1-P Field mustard plastid 90.62 92.06
CDX75902 Canola plastid 87.76 89.39
VIT_05s0077g00830.t01 Wine grape extracellular 73.44 76.22
KRH50715 Soybean mitochondrion, peroxisome, plastid 72.4 74.33
KRH02370 Soybean cytosol, extracellular, plastid 71.88 73.6
KRH36962 Soybean cytosol 70.05 71.93
PGSC0003DMT400067223 Potato mitochondrion 70.05 71.93
KRH11926 Soybean cytosol 69.27 71.51
GSMUA_Achr11P... Banana mitochondrion 68.75 69.84
GSMUA_Achr2P02070_001 Banana mitochondrion 64.58 66.67
HORVU5Hr1G116740.1 Barley cytosol, peroxisome 49.22 66.08
Solyc06g065920.2.1 Tomato nucleus 62.76 64.44
HORVU4Hr1G020150.2 Barley peroxisome 49.74 60.25
EER90579 Sorghum cytosol, mitochondrion, peroxisome, plastid 59.9 60.21
Zm00001d034738_P001 Maize mitochondrion 59.38 60.16
Os03t0832400-01 Rice plasma membrane 59.64 59.33
TraesCS4A01G363400.1 Wheat mitochondrion 58.07 58.53
TraesCS5D01G510100.1 Wheat plastid 58.33 58.18
TraesCS5B01G510000.1 Wheat cytosol, mitochondrion 57.81 58.12
AT5G66080.1 Thale cress plastid 54.69 54.55
AT4G38520.1 Thale cress mitochondrion 56.77 54.5
AT3G55050.2 Thale cress mitochondrion 53.39 53.39
AT3G51370.1 Thale cress cytosol, extracellular 52.34 53.03
AT3G12620.2 Thale cress mitochondrion 52.86 52.73
AT5G02760.1 Thale cress cytosol, mitochondrion 48.18 50.0
AT4G33920.1 Thale cress mitochondrion 48.18 48.68
AT5G06750.3 Thale cress cytosol, mitochondrion 47.66 46.56
TraesCS5A01G478600.1 Wheat cytosol 38.02 41.48
TraesCS3B01G094100.1 Wheat cytosol 51.56 25.75
AT3G16560.1 Thale cress cytosol, nucleus, peroxisome 24.48 19.07
AT1G07630.1 Thale cress cytosol, nucleus, peroxisome 29.17 16.92
AT3G09400.1 Thale cress cytosol, peroxisome, plastid 28.12 16.62
AT2G28890.1 Thale cress nucleus 28.12 16.51
AT5G02400.1 Thale cress nucleus 28.39 16.17
AT2G35350.1 Thale cress nucleus 26.56 13.03
AT2G46920.2 Thale cress nucleus 28.65 12.85
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:18.4.24.2.4Gene3D:3.60.40.10EntrezGene:820966UniProt:A0A178VFV3
ProteinID:AEE75902.1ProteinID:AEE75903.1ArrayExpress:AT3G17090EnsemblPlantsGene:AT3G17090RefSeq:AT3G17090TAIR:AT3G17090
RefSeq:AT3G17090-TAIR-GEnsemblPlants:AT3G17090.1TAIR:AT3G17090.1EMBL:AY085196ProteinID:BAA94987.1EMBL:BT026468
GO:GO:0003674GO:GO:0003824GO:GO:0004721GO:GO:0004722GO:GO:0005488GO:GO:0006464
GO:GO:0006470GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0019538
GO:GO:0043169GO:GO:0046872InterPro:IPR001932InterPro:IPR036457RefSeq:NP_001030714.1RefSeq:NP_566566.1
ProteinID:OAP04558.1PFAM:PF00481PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281
InterPro:PP2CInterPro:PP2C_BSInterPro:PPM-type_dom_sfInterPro:PPM-type_phosphatase_domScanProsite:PS01032PFscan:PS51746
PANTHER:PTHR13832PANTHER:PTHR13832:SF325UniProt:Q0V7V2SMART:SM00332SUPFAM:SSF81606UniParc:UPI0000163411
SEG:seg:::::
Description
Probable protein phosphatase 2C 42 [Source:UniProtKB/Swiss-Prot;Acc:Q0V7V2]
Coordinates
chr3:+:5826586..5829900
Molecular Weight (calculated)
42491.5 Da
IEP (calculated)
6.929
GRAVY (calculated)
-0.280
Length
384 amino acids
Sequence
(BLAST)
001: MSGSLMNLFS LCFKPFGHVC DNSEAGSGGG GGVSGGTGGE GKDGLLWFRD LGKYCGGDFS MAVIQANQVL EDQSQVESGN FGTFVGVYDG HGGPEAARYV
101: CDHLFNHFRE ISAETQGVVT RETIERAFHA TEEGFASIVS ELWQEIPNLA TVGTCCLVGV IYQNTLFVAS LGDSRVVLGK KGNCGGLSAI QLSTEHNANN
201: EDIRWELKDL HPDDPQIVVF RHGVWRVKGI IQVSRSIGDM YMKRPEFNKE PISQKFRIAE PMKRPLMSAT PTILSHPLHP NDSFLIFASD GLWEHLTNEK
301: AVEIVHNHPR AGSAKRLIKA ALHEAARKRE MRYSDLRKID KKVRRHFHDD ITVIVVFLNH DLISRGHINS TQDTTVSIRS ALEH
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.