Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98712 | Canola | plasma membrane | 85.46 | 85.8 |
| CDX94063 | Canola | plasma membrane | 85.07 | 85.4 |
| Bra038748.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 81.93 | 84.76 |
| CDX98711 | Canola | peroxisome, plasma membrane, vacuole | 83.69 | 84.02 |
| Bra038749.1-P | Field mustard | peroxisome, plasma membrane, vacuole | 83.69 | 84.02 |
| CDX94061 | Canola | peroxisome, plasma membrane, vacuole | 82.91 | 83.23 |
| Bra020863.1-P | Field mustard | plasma membrane | 81.53 | 81.85 |
| CDY27431 | Canola | plasma membrane | 81.14 | 81.46 |
| AT4G21903.2 | Thale cress | plasma membrane | 82.71 | 81.43 |
| CDX76392 | Canola | plasma membrane | 72.5 | 80.04 |
| AT1G61890.1 | Thale cress | plasma membrane | 63.65 | 64.67 |
| VIT_10s0116g01880.t01 | Wine grape | plasma membrane | 63.06 | 63.06 |
| AT1G11670.1 | Thale cress | cytosol, peroxisome, plasma membrane | 62.08 | 62.82 |
| VIT_10s0116g01870.t01 | Wine grape | plastid | 61.69 | 61.57 |
| Solyc02g080480.2.1 | Tomato | cytosol, plasma membrane, vacuole | 59.14 | 60.32 |
| KRH11419 | Soybean | plasma membrane | 58.55 | 59.01 |
| AT3G21690.1 | Thale cress | cytosol, peroxisome, plasma membrane | 58.35 | 58.7 |
| PGSC0003DMT400042439 | Potato | cytosol, plasma membrane, vacuole | 58.94 | 56.82 |
| AT5G38030.1 | Thale cress | cytosol, peroxisome, plasma membrane | 42.04 | 42.97 |
| AT1G23300.1 | Thale cress | cytosol, plasma membrane, vacuole | 43.22 | 42.72 |
| AT3G59030.1 | Thale cress | plasma membrane | 42.24 | 42.41 |
| AT1G47530.1 | Thale cress | cytosol, peroxisome, plasma membrane | 40.08 | 42.15 |
| AT5G65380.1 | Thale cress | cytosol, peroxisome, plasma membrane | 39.29 | 41.15 |
| AT1G33110.1 | Thale cress | plasma membrane | 39.88 | 41.09 |
| AT3G26590.1 | Thale cress | cytosol, peroxisome, plasma membrane | 40.27 | 41.0 |
| AT1G33100.1 | Thale cress | plasma membrane | 39.49 | 40.94 |
| AT1G33080.1 | Thale cress | plasma membrane | 39.29 | 40.49 |
| AT5G10420.1 | Thale cress | plasma membrane | 38.7 | 40.29 |
| AT5G44050.1 | Thale cress | plasma membrane | 38.7 | 40.12 |
| AT1G33090.1 | Thale cress | plasma membrane | 38.7 | 39.88 |
| AT1G12950.1 | Thale cress | cytosol, peroxisome, plasma membrane | 40.47 | 39.46 |
| AT4G00350.1 | Thale cress | cytosol, peroxisome, plasma membrane | 40.86 | 38.38 |
| AT4G25640.2 | Thale cress | plasma membrane | 38.51 | 38.13 |
| AT5G17700.2 | Thale cress | plasma membrane | 35.17 | 36.02 |
| AT3G03620.2 | Thale cress | plasma membrane | 35.17 | 35.8 |
Protein Annotations
| MapMan:24.2.4.1.1 | EntrezGene:828280 | ProteinID:AEE84525.1 | ProteinID:AEE84528.2 | ArrayExpress:AT4G21910 | EnsemblPlantsGene:AT4G21910 |
| RefSeq:AT4G21910 | TAIR:AT4G21910 | RefSeq:AT4G21910-TAIR-G | EnsemblPlants:AT4G21910.4 | TAIR:AT4G21910.4 | Unigene:At.22674 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006855 | GO:GO:0008150 |
| GO:GO:0015238 | GO:GO:0015297 | GO:GO:0016020 | GO:GO:0055085 | InterPro:MATE_fam | RefSeq:NP_001320028.1 |
| RefSeq:NP_974587.1 | PFAM:PF01554 | PO:PO:0000293 | PANTHER:PTHR11206 | PANTHER:PTHR11206:SF140 | TIGRFAMs:TIGR00797 |
| TMHMM:TMhelix | UniParc:UPI000034F0F0 | SEG:seg | : | : | : |
Description
MATE efflux family protein [Source:TAIR;Acc:AT4G21910]
Coordinates
chr4:-:11625309..11631255
Molecular Weight (calculated)
55938.1 Da
IEP (calculated)
8.051
GRAVY (calculated)
0.608
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVPSETTNL ADLRRPLVVP VVSERKPPAD VGLGLESVLT ERSLPYRRRV YLGACIEMKL LFRLALPAIL VYLVNSGMGI SARIFAGHLG KNELAAASIG
101: NSCFSLVYGL MLGMGSAVET LCGQAYGAHR YEMLGIYLQR ATIVLALVGL PMTLLYTFSY PILILLGEPK TVSYMGSKYI AGLIPQIFAY AVNFTAQKFL
201: QAQSVVAPSA FISAAALILQ ILLTWITVYV MDMGFMGIAY VLTISWWVIV GSQCFYIAVS PKFRHTWTGL SWRSLQGLWS FFKLSAGSAV MICLEMWYSQ
301: ILVLLAGLLE NPARSLDSLS ICMSISALSF MVSVGFNAAV SVRTSNELGA GNPKSAWFST WTATFVSFVI SVTEALAVIW FRDYVSYIFT EDADVAKAVS
401: DLCPFLAITI ILNGIQPVLS GVAVGCGWQT YVAYVNVGCY YVVGIPVGCI LGFTFDFQAK GIWTGMIGGT LMQTLILLYV TYRTDWDKEV EKARKRLDLW
501: DDKKEPLQN
101: NSCFSLVYGL MLGMGSAVET LCGQAYGAHR YEMLGIYLQR ATIVLALVGL PMTLLYTFSY PILILLGEPK TVSYMGSKYI AGLIPQIFAY AVNFTAQKFL
201: QAQSVVAPSA FISAAALILQ ILLTWITVYV MDMGFMGIAY VLTISWWVIV GSQCFYIAVS PKFRHTWTGL SWRSLQGLWS FFKLSAGSAV MICLEMWYSQ
301: ILVLLAGLLE NPARSLDSLS ICMSISALSF MVSVGFNAAV SVRTSNELGA GNPKSAWFST WTATFVSFVI SVTEALAVIW FRDYVSYIFT EDADVAKAVS
401: DLCPFLAITI ILNGIQPVLS GVAVGCGWQT YVAYVNVGCY YVVGIPVGCI LGFTFDFQAK GIWTGMIGGT LMQTLILLYV TYRTDWDKEV EKARKRLDLW
501: DDKKEPLQN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.