Factsheet for Bra022868.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84756	Canola	plastid	99.41	99.41
Solyc04g071420.2.1	Tomato	cytosol	52.37	76.29
AT2G31840.1	Thale cress	plastid	73.67	71.14
VIT_05s0094g01460.t01	Wine grape	plastid	55.92	57.62
PGSC0003DMT400061937	Potato	plastid	57.4	56.73
KRG90572	Soybean	plastid	55.33	56.16
Zm00001d010261_P001	Maize	cytosol	12.72	44.33
HORVU1Hr1G064560.5	Barley	plastid	42.6	44.31
TraesCS1D01G260200.1	Wheat	plastid	42.6	43.64
TraesCS1B01G270800.1	Wheat	plastid	42.31	43.33
EES19534	Sorghum	plastid	42.31	43.2
TraesCS1A01G260300.2	Wheat	plastid	42.01	40.8
Os05t0417200-01	Rice	plastid	39.65	40.73
GSMUA_Achr5P25800_001	Banana	cytosol, golgi, plastid	48.22	36.06
Zm00001d010259_P001	Maize	nucleus	29.59	33.9
Bra010359.1-P	Field mustard	plastid	26.63	27.78

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	EnsemblPlantsGene:Bra022868	EnsemblPlants:Bra022868.1	EnsemblPlants:Bra022868.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536	GO:GO:0009570	GO:GO:0009658
GO:GO:0009987	GO:GO:0016043	UniProt:M4E268	PANTHER:PTHR34669	PANTHER:PTHR34669:SF1	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI0002540334	SEG:seg	:	:	:

Description

AT2G31840 (E=1e-071) | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28590.1); Has 865 Blast hits to 660 proteins in 98 species: Archae - 0; Bacteria - 14; Metazoa - 354; Fungi - 73; Plants - 57; Viruses - 25; Other Eukaryotes - 342 (source: NCBI BLink).

Coordinates

chrA03:-:7475216..7476755

Molecular Weight (calculated)

38932.8 Da

IEP (calculated)

4.586

GRAVY (calculated)

-0.670

Length

338 amino acids

Sequence
(BLAST)

001: MILPYSTRVT SPVNGFIITP PLFSGVSASA LCKRNGFEVP SSRYECSASV NMKVNVTRSR RNVKAFGLVD KLGKKSWRNK EESDSEDEED EVKKDTSDKR
101: SASLDDPEER REWRQKIREV IDSHPDVEEE EIDMVEKRRK MQKLLADYPL VVNEEDPDWP EDADGWGFSF NQFFNKITIK NEKKDDDDDD DKEIIWQDDN
201: YIRPIKDLTT AEWEEAVFKD ISPLMVLVHN RYKRPKENEK FREELDKAIQ VIWNCGLPSP RCVAVDAVVE TDLVSALQVT VFPEIIFTKA GKILYREKGI
301: RTADDLSKIM AFFYYGAAKP PCLNGVDCSQ EQIPSVDL

Best Arabidopsis Sequence Match ( AT2G31840.2 )
(BLAST)

001: MILPFSTQFT CPVQDNGFSP SSLLSHCKRD RFEVTSLRYD SFGSVKTASS SKWNVMRSRR NVKAFGLVDK LGKKVWRKKE EDSDSEDEED EVKEETFGGK
101: EASLDDPVER REWRKTIREV IDKHPDIEED EEIDMVEKRR KMQKLLADYP LVVNEEDPNW PEDADGWGFS FNQFFNKITI KNEKKEEEDD DEDSEGDDSE
201: KEIVWQDDNY IRPIKDLTTA EWEEAVFKDI SPLMVLVHNR YKRPKENEKF REELEKAIQV IWNCGLPSPR CVAVDAVVET DLVSALKVSV FPEIIFTKAG
301: KILYREKGIR TADELSKIMA FFYYGAAKPP CLNGVVNSQE QIPLVDVSVN

Arabidopsis Description

MRL7LThioredoxin-like fold domain-containing protein MRL7L, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SKB6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.