CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	endoplasmic reticulum	18.11	29.87
CDX72382	Canola	cytosol	59.84	29.01
CDY13510	Canola	cytosol	59.84	29.01
PGSC0003DMT400075344	Potato	cytosol	49.61	24.23
Solyc12g095920.1.1	Tomato	cytosol	49.61	24.05
KRH52175	Soybean	mitochondrion	49.61	22.58
VIT_04s0008g00750.t01	Wine grape	extracellular	24.41	22.3
VIT_05s0020g04140.t01	Wine grape	extracellular	32.28	21.69
EER89207	Sorghum	cytosol	44.88	20.07
Os06t0150100-01	Rice	plasma membrane	44.88	20.0
Zm00001d036201_P001	Maize	cytosol	44.88	19.79
TraesCS7A01G104100.1	Wheat	plastid	42.52	17.94
TraesCS4A01G402500.1	Wheat	plastid	41.73	17.43
TraesCS7D01G097800.1	Wheat	plastid	41.73	17.38
HORVU7Hr1G021910.1	Barley	cytosol	42.52	16.98
AT4G32970.1	Thale cress	cytosol	56.69	11.29

Protein Annotations

EnsemblPlants:CDX68926	EnsemblPlantsGene:GSBRNA2T00130669001	GO:A0A078BVT3	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0045739	GO:GO:0070531	GO:GO:0070552	InterPro:BABAM1	PANTHER:PTHR15660
ProteinID:CDX68926	ProteinID:CDX68926.1	UniParc:UPI0004EE3A99	MapMan:14.3.2.5	:	:

Description

BnaC01g05270D

Coordinates

chrLK031789:-:2059683..2061707

Molecular Weight (calculated)

14528.6 Da

IEP (calculated)

9.565

GRAVY (calculated)

-0.144

Length

127 amino acids

Sequence
(BLAST)

001: MLLGGLQLLG RFSVVKGFHQ QCQICYCFYE RIVRATKSSG RADLTLLFRA AAQEAKHSRA QNLILRILIY RRSSVRPTHD WPIRQKLFTL DVLYFPDKPN
101: PDNCPQGVYG SLVDAVEHVS DMSNNVF

Best Arabidopsis Sequence Match ( AT4G32960.1 )
(BLAST)

001: MEEERVAVTG VGTTRYALKP GRIKSEDILI CIDVDAESMV EMKTTGTNGR PLIRMECVKQ AIILFIHNKL SINPDHRFAF ATLAKSAAWL KKEFTSDAES
101: AVASLRGLSG NKSSSRADLT LLFRAAAQEA KVSRAQNRIF RVILIYCRSS MRPTHEWPLN QKLFTLDVMY LHDKPSPDNC PQDVYDSLVD AVEHVSEYEG
201: YIFESGQGLA RSVFKPMSML LTHPQQRCAQ DDLDIPMSLA KKVPVTEAAS AVDPHNGNNI QIIN

Arabidopsis Description

At4g32960 [Source:UniProtKB/TrEMBL;Acc:O82638]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.