Factsheet for VIT_05s0020g04140.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g00750.t01	Wine grape	extracellular	33.86	46.04
PGSC0003DMT400075344	Potato	cytosol	58.73	42.69
Solyc12g095920.1.1	Tomato	cytosol	58.2	41.98
Bra037032.1-P	Field mustard	cytosol	53.97	38.93
CDY13510	Canola	cytosol	53.97	38.93
CDX72382	Canola	cytosol	53.44	38.55
AT4G32960.1	Thale cress	cytosol	53.44	38.26
KRH52175	Soybean	mitochondrion	53.44	36.2
GSMUA_Achr10P...	Banana	endoplasmic reticulum	13.76	33.77
CDX68926	Canola	mitochondrion	21.69	32.28
EER89207	Sorghum	cytosol	48.15	32.04
Os06t0150100-01	Rice	plasma membrane	47.09	31.23
Zm00001d036201_P001	Maize	cytosol	46.56	30.56
HORVU7Hr1G021910.1	Barley	cytosol	47.62	28.3
TraesCS7A01G104100.1	Wheat	plastid	44.97	28.24
TraesCS7D01G097800.1	Wheat	plastid	45.5	28.2
TraesCS4A01G402500.1	Wheat	plastid	44.97	27.96
AT4G32970.1	Thale cress	cytosol	47.09	13.95

Protein Annotations

MapMan:14.3.2.5	InterPro:BABAM1	ProteinID:CCB50462	ProteinID:CCB50462.1	UniProt:F6HDU1	EMBL:FN595749
GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006464	GO:GO:0006470	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0045739
GO:GO:0070531	GO:GO:0070552	PANTHER:PTHR15660	UniParc:UPI000210A712	ArrayExpress:VIT_05s0020g04140	EnsemblPlantsGene:VIT_05s0020g04140
EnsemblPlants:VIT_05s0020g04140.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:5785402..5786086

Molecular Weight (calculated)

21295.6 Da

IEP (calculated)

7.007

GRAVY (calculated)

-0.165

Length

189 amino acids

Sequence
(BLAST)

001: MVEMKATGSK GKPISIMYSI KQAILLFVYA RFAVNSDHCF VFATLGKTTS WLQREFSNEF DSAIATLRGL SIDGSGGNAD LTQLFRHQWP ANPKLFTLDV
101: VYLHDKPSPE NCPQKVYDAL MDALEHVSEH EGPTYESRQE LTRVLFHYMC VLLSHPQQRC QSDGVNIPKP LTKEAAIFIT QVVIMHHPG

Best Arabidopsis Sequence Match ( AT4G32960.1 )
(BLAST)

001: MEEERVAVTG VGTTRYALKP GRIKSEDILI CIDVDAESMV EMKTTGTNGR PLIRMECVKQ AIILFIHNKL SINPDHRFAF ATLAKSAAWL KKEFTSDAES
101: AVASLRGLSG NKSSSRADLT LLFRAAAQEA KVSRAQNRIF RVILIYCRSS MRPTHEWPLN QKLFTLDVMY LHDKPSPDNC PQDVYDSLVD AVEHVSEYEG
201: YIFESGQGLA RSVFKPMSML LTHPQQRCAQ DDLDIPMSLA KKVPVTEAAS AVDPHNGNNI QIIN

Arabidopsis Description

At4g32960 [Source:UniProtKB/TrEMBL;Acc:O82638]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.