Factsheet for PGSC0003DMT400075344

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g095920.1.1	Tomato	cytosol	96.15	95.42
CDX72382	Canola	cytosol	62.31	61.83
CDY13510	Canola	cytosol	61.92	61.45
Bra037032.1-P	Field mustard	cytosol	61.15	60.69
KRH52175	Soybean	mitochondrion	65.0	60.57
VIT_05s0020g04140.t01	Wine grape	extracellular	42.69	58.73
AT4G32960.1	Thale cress	cytosol	59.62	58.71
GSMUA_Achr10P...	Banana	endoplasmic reticulum	17.31	58.44
VIT_04s0008g00750.t01	Wine grape	extracellular	28.08	52.52
EER89207	Sorghum	cytosol	57.31	52.46
Zm00001d036201_P001	Maize	cytosol	57.31	51.74
Os06t0150100-01	Rice	plasma membrane	56.54	51.58
CDX68926	Canola	mitochondrion	24.23	49.61
TraesCS7A01G104100.1	Wheat	plastid	53.85	46.51
TraesCS7D01G097800.1	Wheat	plastid	54.23	46.23
TraesCS4A01G402500.1	Wheat	plastid	53.08	45.39
HORVU7Hr1G021910.1	Barley	cytosol	55.38	45.28
AT4G32970.1	Thale cress	cytosol	51.54	21.0

Protein Annotations

EntrezGene:102596388	MapMan:14.3.2.5	Gene3D:3.40.50.410	InterPro:BABAM1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0045739	GO:GO:0070531	GO:GO:0070552	InterPro:IPR036465
UniProt:M1CV03	EnsemblPlantsGene:PGSC0003DMG400029302	PGSC:PGSC0003DMG400029302	EnsemblPlants:PGSC0003DMT400075344	PANTHER:PTHR15660	SUPFAM:SSF53300
UniParc:UPI000295F89C	RefSeq:XP_006342508.1	InterPro:vWFA_dom_sf	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029302]

Coordinates

chr12:-:57738810..57743498

Molecular Weight (calculated)

28728.2 Da

IEP (calculated)

6.707

GRAVY (calculated)

-0.245

Length

260 amino acids

Sequence
(BLAST)

001: MEGLEGQGSG PPAASRYTLQ PTRLASEDIL FCVDVDNESL VEMKVAAAGG RPYTRLDSIK QAILLFVNAK LTINPDHRFA FATLGKSASW VRKEFTSDID
101: SVVSACRGIA VDSPCGHADL TQLFRVAAHE AKKTRAQNRI LRVVLLYCRS SIPPQHQWPA TQKLFTLDVV YLHDKPGPDN CPQKVYDALV EALEHVSEYE
201: GYIFESGQGL TRVLFRHMCT LLSHPQQRCV QDDLDIPKSL TKKSSDSAPT DENAVVVSSQ

Best Arabidopsis Sequence Match ( AT4G32960.1 )
(BLAST)

001: MEEERVAVTG VGTTRYALKP GRIKSEDILI CIDVDAESMV EMKTTGTNGR PLIRMECVKQ AIILFIHNKL SINPDHRFAF ATLAKSAAWL KKEFTSDAES
101: AVASLRGLSG NKSSSRADLT LLFRAAAQEA KVSRAQNRIF RVILIYCRSS MRPTHEWPLN QKLFTLDVMY LHDKPSPDNC PQDVYDSLVD AVEHVSEYEG
201: YIFESGQGLA RSVFKPMSML LTHPQQRCAQ DDLDIPMSLA KKVPVTEAAS AVDPHNGNNI QIIN

Arabidopsis Description

At4g32960 [Source:UniProtKB/TrEMBL;Acc:O82638]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.