CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

cytosol 1
plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49434	Canola	golgi, vacuole	98.95	98.95
Bra039931.1-P	Field mustard	golgi, vacuole	88.84	93.78
CDY16450	Canola	extracellular, vacuole	80.63	83.81
CDX89542	Canola	endoplasmic reticulum, extracellular	12.84	73.49
CDY38927	Canola	endoplasmic reticulum, extracellular	68.42	67.43
CDY38926	Canola	endoplasmic reticulum	64.21	61.37
AT1G78490.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	56.84	56.37
CDX89543	Canola	cytosol	38.53	56.31
CDY04940	Canola	endoplasmic reticulum, extracellular	31.16	55.02
CDX80949	Canola	extracellular, golgi, plasma membrane	53.26	49.13
VIT_15s0048g01960.t01	Wine grape	cytosol	22.95	36.58
CDY16028	Canola	extracellular, golgi	35.16	35.31
CDY26591	Canola	extracellular, golgi, plasma membrane	34.11	35.22
CDY66605	Canola	endoplasmic reticulum, extracellular	34.95	35.02
CDY60267	Canola	extracellular, golgi	34.53	34.67
CDY04961	Canola	cytosol	15.16	31.72
CDX99676	Canola	cytosol	14.53	29.87
CDY26518	Canola	mitochondrion	17.68	29.27
CDY14104	Canola	endoplasmic reticulum	27.37	27.31
CDX85598	Canola	cytosol	24.84	27.25
CDX91063	Canola	cytosol	24.84	27.13
CDY49400	Canola	endoplasmic reticulum, golgi	28.0	26.92
CDX70137	Canola	endoplasmic reticulum, golgi	27.16	26.88
CDX98856	Canola	endoplasmic reticulum, golgi	27.16	26.88
CDY24488	Canola	endoplasmic reticulum, golgi	28.0	26.87
CDX69583	Canola	cytosol	24.42	26.67
CDX77934	Canola	endoplasmic reticulum, golgi	27.79	26.67
CDX99675	Canola	endoplasmic reticulum	25.26	25.81
CDY09852	Canola	endoplasmic reticulum, extracellular	25.68	25.68
CDY11332	Canola	endoplasmic reticulum, golgi	25.89	25.68
CDX86355	Canola	golgi	24.63	25.16
CDY00084	Canola	endoplasmic reticulum, golgi	24.42	24.95
CDX72982	Canola	endoplasmic reticulum, golgi	25.05	24.59
CDY19979	Canola	endoplasmic reticulum, golgi	24.0	24.52
CDX80969	Canola	endoplasmic reticulum	23.79	24.51
CDY35786	Canola	endoplasmic reticulum, golgi	23.79	24.46
CDX97511	Canola	extracellular, golgi	25.26	24.44
CDX96469	Canola	endoplasmic reticulum, golgi	24.84	24.38
CDY66116	Canola	endoplasmic reticulum, golgi	23.58	24.24
CDY37485	Canola	extracellular, golgi	24.84	23.98
CDY51737	Canola	endoplasmic reticulum, golgi	24.84	23.98
CDY59695	Canola	golgi	24.63	23.17
CDY15962	Canola	endoplasmic reticulum, plasma membrane	21.68	22.15
CDY64922	Canola	plasma membrane	24.63	21.59
CDX75570	Canola	cytosol, golgi, plastid	23.37	21.06
CDX85284	Canola	endoplasmic reticulum, golgi	16.21	20.81
CDY23635	Canola	endoplasmic reticulum, golgi	14.53	20.12
CDX69220	Canola	golgi, peroxisome, plastid	16.0	17.47

Protein Annotations

Gene3D:1.10.630.10	MapMan:50.1.13	GO:A0A078CLH9	EnsemblPlants:CDX76894	ProteinID:CDX76894	ProteinID:CDX76894.1
ncoils:Coil	InterPro:Cyt_P450	InterPro:Cyt_P450_CS	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152
GO:GO:0016705	GO:GO:0020037	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00127413001	InterPro:IPR036396	PFAM:PF00067
PRINTS:PR00465	ScanProsite:PS00086	PANTHER:PTHR24286	PANTHER:PTHR24286:SF11	SUPFAM:SSF48264	TMHMM:TMhelix
UniParc:UPI0004EDAF58	SEG:seg	:	:	:	:

Description

BnaC08g34800D

Coordinates

chrLK031808:-:1802302..1804352

Molecular Weight (calculated)

54895.6 Da

IEP (calculated)

9.662

GRAVY (calculated)

-0.146

Length

475 amino acids

Sequence
(BLAST)

001: MSFMWNVVYV IIALVVVKIS QWLWQWSNPN SKGSGKLPPG SMGFPIVGET FEFFRSSGLL EIPPFFQKRM LRYGPLFRTN ILGSRTVIST DADVIYEIFR
101: QENQSFIQSY PDIFVKVLGK DNVFFKTGDI HRHIKHATMH LIGSEGLKRK LIGFMNRTTR EHLRWKATQG AFNLRHAASN LIVSYITPQM ISNLKPETQE
201: KLIDHFKTFN IEWFQSPFAL STWKTVYKVL TARKEAVKII NEALEKRKDS IEKQGDFLDT LLEEMKKEGS IFYKESIVSL LLNIGFVSRD STSYATALTV
301: NFISKNPRVL TELKREHEAI VQKRDDKEPG LSWEEYKNCM PFTRMVIYDE PQLLIYPFSK ILIRRYTIPA GWIVAVAPSV VHYNSEIYEN PLEFNPWRWE
401: GKDLQSPGSK TLMVFGGGAR QCIGSDLARL HLAVFIHHFV TTYDFSVVQE CEICRVPFPF FTKDLVINIS LKSPS

Best Arabidopsis Sequence Match ( AT1G78490.1 )
(BLAST)

001: MSSIWNVAML MVALVVVRIS HWLYRWSNPK CPGKLPPGSM GFPIIGETLD FFKPCGVEGI PTFVKKRMIR YGPLFRTNIF GSKTVVSTDP DVIHQIFRQE
101: NTSFELGYPD IFVKVFGKDN LFLKEVFIHK YLQKITMQIL GSEGLKQTML GNMDKATRDH IRSIASQGSF NVRKEVENLV VAYMTPKLIS NLKPETQSKL
201: IDNLNAFNLD WFKSFLRLST WKAVTKALKS REEAIQVMKD VLMMRKETRE KQEDFLNTLL EELEKDGSFF DQGSAINLIF LLAFALREGT SSCTALAVKF
301: ISKDPKVLAE LKREHKAIVD NRKDKEAGVS WEEYRHNMTF TNMVSNEVLR LANTTPLLFR KAVQDVEIKG YTIPAGWIVA VAPSAVHFDP AIYENPFEFN
401: PWRWEGKEMI WGSKTFMAFG YGVRLCVGAE FSRLQMAIFL HHLVAYYDFS MVQDSEIIRS PFHQYTKDLL INISQSPTK

Arabidopsis Description

CYP708A3CYP708A3 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR8]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.