Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 6
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13730.1 | CDY04092 | AT2G01570.1 | 21798944 |
| AT3G13730.1 | CDY17662 | AT2G01570.1 | 21798944 |
| AT3G13730.1 | CDY36236 | AT2G01570.1 | 21798944 |
| AT3G13730.1 | CDY64837 | AT2G01570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97511 | Canola | extracellular, golgi | 94.46 | 65.99 |
| AT3G13730.1 | Thale cress | extracellular, golgi | 83.97 | 58.66 |
| CDY37485 | Canola | extracellular, golgi | 82.8 | 57.72 |
| CDY51737 | Canola | endoplasmic reticulum, golgi | 82.51 | 57.52 |
| KRH44159 | Soybean | golgi | 55.98 | 40.51 |
| KRH47133 | Soybean | extracellular, golgi | 55.39 | 40.17 |
| VIT_09s0002g02080.t01 | Wine grape | endoplasmic reticulum | 53.94 | 38.95 |
| Solyc03g121510.2.1 | Tomato | endoplasmic reticulum, golgi | 50.15 | 36.99 |
| GSMUA_Achr7P09630_001 | Banana | endoplasmic reticulum, golgi | 49.56 | 35.79 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 44.61 | 34.0 |
| HORVU3Hr1G018860.5 | Barley | endoplasmic reticulum | 48.69 | 33.67 |
| TraesCS3B01G121200.1 | Wheat | plastid | 48.4 | 33.6 |
| TraesCS3D01G106100.1 | Wheat | plastid | 47.52 | 33.33 |
| Os01t0197100-01 | Rice | endoplasmic reticulum | 47.52 | 33.27 |
| GSMUA_Achr2P16740_001 | Banana | endoplasmic reticulum, golgi, plastid | 43.73 | 33.11 |
| TraesCS3A01G103800.1 | Wheat | plastid | 46.36 | 32.65 |
| EES02301 | Sorghum | endoplasmic reticulum, golgi, plastid | 48.4 | 32.61 |
| CDX69220 | Canola | golgi, peroxisome, plastid | 40.52 | 31.95 |
| Zm00001d039453_P001 | Maize | plastid | 46.94 | 31.94 |
| EES17857 | Sorghum | plastid | 46.36 | 30.29 |
| Zm00001d037745_P001 | Maize | plasma membrane, plastid | 45.48 | 29.89 |
| CDX89542 | Canola | endoplasmic reticulum, extracellular | 7.0 | 28.92 |
| CDY59695 | Canola | golgi | 40.52 | 27.52 |
| CDX75570 | Canola | cytosol, golgi, plastid | 40.23 | 26.19 |
| CDY64922 | Canola | plasma membrane | 40.52 | 25.65 |
| CDX85284 | Canola | endoplasmic reticulum, golgi | 25.95 | 24.05 |
| Os05t0200400-01 | Rice | endoplasmic reticulum, mitochondrion, plastid | 18.08 | 21.99 |
| CDY04940 | Canola | endoplasmic reticulum, extracellular | 17.2 | 21.93 |
| CDX98856 | Canola | endoplasmic reticulum, golgi | 30.32 | 21.67 |
| CDX70137 | Canola | endoplasmic reticulum, golgi | 30.03 | 21.46 |
| CDX80969 | Canola | endoplasmic reticulum | 28.28 | 21.04 |
| CDY14104 | Canola | endoplasmic reticulum | 29.15 | 21.01 |
| CDY11332 | Canola | endoplasmic reticulum, golgi | 28.28 | 20.25 |
| CDX86355 | Canola | golgi | 26.53 | 19.57 |
| CDY15962 | Canola | endoplasmic reticulum, plasma membrane | 25.95 | 19.14 |
| CDX99675 | Canola | endoplasmic reticulum | 25.95 | 19.14 |
| CDX77934 | Canola | endoplasmic reticulum, golgi | 27.41 | 18.99 |
| CDY24488 | Canola | endoplasmic reticulum, golgi | 27.41 | 18.99 |
| GSMUA_Achr9P28740_001 | Banana | cytosol | 13.12 | 18.83 |
| CDY49400 | Canola | endoplasmic reticulum, golgi | 27.11 | 18.83 |
| CDY00084 | Canola | endoplasmic reticulum, golgi | 25.36 | 18.71 |
| CDY19979 | Canola | endoplasmic reticulum, golgi | 25.07 | 18.49 |
| CDY16028 | Canola | extracellular, golgi | 25.36 | 18.39 |
| CDX72982 | Canola | endoplasmic reticulum, golgi | 25.95 | 18.39 |
| CDY26591 | Canola | extracellular, golgi, plasma membrane | 24.49 | 18.26 |
| CDX96469 | Canola | endoplasmic reticulum, golgi | 25.66 | 18.18 |
| CDY35786 | Canola | endoplasmic reticulum, golgi | 24.2 | 17.97 |
| CDY66116 | Canola | endoplasmic reticulum, golgi | 24.2 | 17.97 |
| CDY60267 | Canola | extracellular, golgi | 24.49 | 17.76 |
| CDY66605 | Canola | endoplasmic reticulum, extracellular | 24.2 | 17.51 |
| CDX91063 | Canola | cytosol | 22.16 | 17.47 |
| CDX85598 | Canola | cytosol | 21.87 | 17.32 |
| CDX69583 | Canola | cytosol | 21.87 | 17.24 |
| CDY09852 | Canola | endoplasmic reticulum, extracellular | 23.62 | 17.05 |
| CDX80949 | Canola | extracellular, golgi, plasma membrane | 21.87 | 14.56 |
| CDY49434 | Canola | golgi, vacuole | 20.12 | 14.53 |
| CDX76894 | Canola | extracellular, golgi, vacuole | 20.12 | 14.53 |
| CDY38926 | Canola | endoplasmic reticulum | 20.7 | 14.29 |
| CDY16450 | Canola | extracellular, vacuole | 18.66 | 14.0 |
| CDY38927 | Canola | endoplasmic reticulum, extracellular | 18.37 | 13.07 |
| CDY26518 | Canola | mitochondrion | 9.04 | 10.8 |
| CDX89543 | Canola | cytosol | 8.75 | 9.23 |
| CDX99676 | Canola | cytosol | 5.25 | 7.79 |
| CDY04961 | Canola | cytosol | 4.37 | 6.61 |
Protein Annotations
| Gene3D:1.10.630.10 | MapMan:35.1 | GO:A0A078GB16 | UniProt:A0A078GB16 | EnsemblPlants:CDY23635 | ProteinID:CDY23635 |
| ProteinID:CDY23635.1 | InterPro:Cyt_P450 | InterPro:Cyt_P450_sf | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005506 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016705 | GO:GO:0020037 | GO:GO:0055114 |
| EnsemblPlantsGene:GSBRNA2T00023861001 | InterPro:IPR036396 | PFAM:PF00067 | PANTHER:PTHR24286 | PANTHER:PTHR24286:SF30 | SUPFAM:SSF48264 |
| TMHMM:TMhelix | UniParc:UPI0004EF02AD | SEG:seg | : | : | : |
Description
BnaC05g39590DBnaC05g39590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GB16]
Coordinates
chrLK032145:-:569133..570522
Molecular Weight (calculated)
38506.1 Da
IEP (calculated)
9.494
GRAVY (calculated)
-0.011
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MDISSSLLLL SFFLFVIIIF IFNKINGLRT SSVSKKKPTE HVSTHSYGPR FPQGSLGWPI LGETIEFVSS AYSDHPESFM DKRRVMYGRV FKSHIFGTAT
101: IVSTDAEVNK AVLQSDSTAF VPFYPKTVRD LMGKSSILLI NGSLHRRFHG LVGSFLKSPP LKAQIVRDMH KFLSESMDLW SEDQPVLLQD VSKNVAFKVL
201: AKALISVEKG EELEELKEEF EQFIRGLMSL PINLPGTQLH RSLQAKKKMV KQVEKIIGDK VRREKNKEED GAVAKDVVDV LLKDSSENLT HNLIANNMID
301: MMIPGHDSVP VLITLAVKFL SDSPTALHFL TVTNLNHIQV MIV
101: IVSTDAEVNK AVLQSDSTAF VPFYPKTVRD LMGKSSILLI NGSLHRRFHG LVGSFLKSPP LKAQIVRDMH KFLSESMDLW SEDQPVLLQD VSKNVAFKVL
201: AKALISVEKG EELEELKEEF EQFIRGLMSL PINLPGTQLH RSLQAKKKMV KQVEKIIGDK VRREKNKEED GAVAKDVVDV LLKDSSENLT HNLIANNMID
301: MMIPGHDSVP VLITLAVKFL SDSPTALHFL TVTNLNHIQV MIV
001: MDTSSSLLFF SFFFFIIIVI FNKINGLRSS PASKKKLNDH HVTSQSHGPK FPHGSLGWPV IGETIEFVSS AYSDRPESFM DKRRLMYGRV FKSHIFGTAT
101: IVSTDAEVNR AVLQSDSTAF VPFYPKTVRE LMGKSSILLI NGSLHRRFHG LVGSFLKSPL LKAQIVRDMH KFLSESMDLW SEDQPVLLQD VSKTVAFKVL
201: AKALISVEKG EDLEELKREF ENFISGLMSL PINFPGTQLH RSLQAKKNMV KQVERIIEGK IRKTKNKEED DVIAKDVVDV LLKDSSEHLT HNLIANNMID
301: MMIPGHDSVP VLITLAVKFL SDSPAALNLL TEENMKLKSL KELTGEPLYW NDYLSLPFTQ KVITETLRMG NVIIGVMRKA MKDVEIKGYV IPKGWCFLAY
401: LRSVHLDKLY YESPYKFNPW RWQERDMNTS SFSPFGGGQR LCPGLDLARL ETSVFLHHLV TRFRWIAEED TIINFPTVHM KNKLPIWIKR I
101: IVSTDAEVNR AVLQSDSTAF VPFYPKTVRE LMGKSSILLI NGSLHRRFHG LVGSFLKSPL LKAQIVRDMH KFLSESMDLW SEDQPVLLQD VSKTVAFKVL
201: AKALISVEKG EDLEELKREF ENFISGLMSL PINFPGTQLH RSLQAKKNMV KQVERIIEGK IRKTKNKEED DVIAKDVVDV LLKDSSEHLT HNLIANNMID
301: MMIPGHDSVP VLITLAVKFL SDSPAALNLL TEENMKLKSL KELTGEPLYW NDYLSLPFTQ KVITETLRMG NVIIGVMRKA MKDVEIKGYV IPKGWCFLAY
401: LRSVHLDKLY YESPYKFNPW RWQERDMNTS SFSPFGGGQR LCPGLDLARL ETSVFLHHLV TRFRWIAEED TIINFPTVHM KNKLPIWIKR I
Arabidopsis Description
CYP90D1CYP90D1 [Source:UniProtKB/TrEMBL;Acc:A0A178VDZ8]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.