Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- endoplasmic reticulum 4
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EER93592 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13730.1 | EER93592 | AT2G01570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039453_P001 | Maize | plastid | 91.55 | 92.46 |
| TraesCS3D01G106100.1 | Wheat | plastid | 79.76 | 83.03 |
| TraesCS3A01G103800.1 | Wheat | plastid | 79.17 | 82.75 |
| TraesCS3B01G121200.1 | Wheat | plastid | 79.76 | 82.19 |
| HORVU3Hr1G018860.5 | Barley | endoplasmic reticulum | 79.96 | 82.06 |
| Os01t0197100-01 | Rice | endoplasmic reticulum | 78.39 | 81.43 |
| GSMUA_Achr9P28740_001 | Banana | cytosol | 36.94 | 78.66 |
| GSMUA_Achr7P09630_001 | Banana | endoplasmic reticulum, golgi | 64.64 | 69.26 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 60.71 | 68.67 |
| GSMUA_Achr2P16740_001 | Banana | endoplasmic reticulum, golgi, plastid | 60.71 | 68.21 |
| EES17857 | Sorghum | plastid | 68.37 | 66.29 |
| VIT_09s0002g02080.t01 | Wine grape | endoplasmic reticulum | 59.53 | 63.79 |
| KRH44159 | Soybean | golgi | 59.14 | 63.5 |
| KRH47133 | Soybean | extracellular, golgi | 58.94 | 63.42 |
| Solyc03g121510.2.1 | Tomato | endoplasmic reticulum, golgi | 54.22 | 59.35 |
| CDX97511 | Canola | extracellular, golgi | 54.81 | 56.82 |
| CDY37485 | Canola | extracellular, golgi | 54.62 | 56.5 |
| AT3G13730.1 | Thale cress | extracellular, golgi | 54.22 | 56.21 |
| Bra021505.1-P | Field mustard | endoplasmic reticulum, golgi | 54.22 | 56.1 |
| CDY51737 | Canola | endoplasmic reticulum, golgi | 54.22 | 56.1 |
| Bra027405.1-P | Field mustard | endoplasmic reticulum, golgi | 52.06 | 55.91 |
| CDY23635 | Canola | endoplasmic reticulum, golgi | 32.61 | 48.4 |
| EER93839 | Sorghum | endoplasmic reticulum | 32.02 | 35.05 |
| OQU82855 | Sorghum | endoplasmic reticulum | 34.38 | 34.05 |
| KXG30524 | Sorghum | endoplasmic reticulum | 32.42 | 33.81 |
| EES10969 | Sorghum | endoplasmic reticulum | 30.65 | 31.9 |
| EES05736 | Sorghum | endoplasmic reticulum | 29.47 | 31.12 |
| EER92600 | Sorghum | endoplasmic reticulum | 30.45 | 30.69 |
| OQU82181 | Sorghum | endoplasmic reticulum, golgi, vacuole | 29.67 | 30.57 |
| KXG39740 | Sorghum | endoplasmic reticulum | 28.09 | 29.92 |
| KXG37898 | Sorghum | endoplasmic reticulum | 27.7 | 29.31 |
| EER91217 | Sorghum | endoplasmic reticulum, golgi | 27.7 | 29.31 |
| EER91122 | Sorghum | endoplasmic reticulum | 27.5 | 29.05 |
| EES12690 | Sorghum | endoplasmic reticulum | 29.47 | 29.01 |
| KXG28806 | Sorghum | extracellular, plasma membrane | 25.74 | 28.42 |
| EER91216 | Sorghum | endoplasmic reticulum | 26.72 | 28.22 |
| OQU91239 | Sorghum | plastid | 28.49 | 28.16 |
| KXG34804 | Sorghum | cytosol | 24.36 | 27.93 |
| KXG34877 | Sorghum | endoplasmic reticulum, extracellular | 25.93 | 27.67 |
| KXG27894 | Sorghum | endoplasmic reticulum, plasma membrane | 24.95 | 25.92 |
Protein Annotations
| Gene3D:1.10.630.10 | MapMan:11.3.1.4 | EntrezGene:8082830 | UniProt:C5XLV4 | ncoils:Coil | InterPro:Cyt_P450 |
| InterPro:Cyt_P450_CS | InterPro:Cyt_P450_E_grp-I | InterPro:Cyt_P450_sf | EnsemblPlants:EES02301 | ProteinID:EES02301 | ProteinID:EES02301.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004497 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 |
| GO:GO:0006629 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0010268 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016125 | GO:GO:0016132 | GO:GO:0016491 | GO:GO:0016705 |
| GO:GO:0016709 | GO:GO:0020037 | GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR036396 | PFAM:PF00067 |
| PRINTS:PR00463 | ScanProsite:PS00086 | PANTHER:PTHR24286 | PANTHER:PTHR24286:SF98 | EnsemblPlantsGene:SORBI_3003G030600 | SUPFAM:SSF48264 |
| TMHMM:TMhelix | UniParc:UPI0001A84F61 | RefSeq:XP_002457181.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr3:-:2718024..2725425
Molecular Weight (calculated)
57111.8 Da
IEP (calculated)
10.020
GRAVY (calculated)
-0.118
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MSITTLQLLP WPPEPARAAV LPPLLLAAAA AVVVCLWALL SRRLISRERA AGGKEQAVPA RLPPGSFGWP VVGETLEFVS CAYSSRPEAF VDKRRLLHGS
101: AVFRSHLFGS ATVVTSDAEV SRFVLQSDAR AFVPWYPRSL TELMGKSSIL LINGSLQRRV HGLVGAFFKS PQLKAQVTAD MQRRLAPALD AWRARGPAAP
201: PLRIQDHAKT IVFEILVKGL IGLEAGPEMQ QLKHQFQEFI VGLMSLPIKL PGTRLYRSLQ AKKRMARLIQ GIIQEKRRRL DDGGKGEPGP PRDAIDVLIS
301: GGSDELTDDL ISDNMIDLMI PAEDSVPVLI TLAVKYLSEC PLALQQLEEE NMQLKRRKTD MGETLQWTDY MSLSFTQHVI TETLRMGNII NGIMRKAVRD
401: VEVKGHLIPK GWCVFVYFRS VHLDDKRYDE PYRFNPWRWK EKDTSTSSFT PFGGGQRLCP GLDLARLEAS IFLHHLVTSF RWVAEEDHIV NFPTVRLKRG
501: MPIRLTSKD
101: AVFRSHLFGS ATVVTSDAEV SRFVLQSDAR AFVPWYPRSL TELMGKSSIL LINGSLQRRV HGLVGAFFKS PQLKAQVTAD MQRRLAPALD AWRARGPAAP
201: PLRIQDHAKT IVFEILVKGL IGLEAGPEMQ QLKHQFQEFI VGLMSLPIKL PGTRLYRSLQ AKKRMARLIQ GIIQEKRRRL DDGGKGEPGP PRDAIDVLIS
301: GGSDELTDDL ISDNMIDLMI PAEDSVPVLI TLAVKYLSEC PLALQQLEEE NMQLKRRKTD MGETLQWTDY MSLSFTQHVI TETLRMGNII NGIMRKAVRD
401: VEVKGHLIPK GWCVFVYFRS VHLDDKRYDE PYRFNPWRWK EKDTSTSSFT PFGGGQRLCP GLDLARLEAS IFLHHLVTSF RWVAEEDHIV NFPTVRLKRG
501: MPIRLTSKD
001: MDTSSSLLFF SFFFFIIIVI FNKINGLRSS PASKKKLNDH HVTSQSHGPK FPHGSLGWPV IGETIEFVSS AYSDRPESFM DKRRLMYGRV FKSHIFGTAT
101: IVSTDAEVNR AVLQSDSTAF VPFYPKTVRE LMGKSSILLI NGSLHRRFHG LVGSFLKSPL LKAQIVRDMH KFLSESMDLW SEDQPVLLQD VSKTVAFKVL
201: AKALISVEKG EDLEELKREF ENFISGLMSL PINFPGTQLH RSLQAKKNMV KQVERIIEGK IRKTKNKEED DVIAKDVVDV LLKDSSEHLT HNLIANNMID
301: MMIPGHDSVP VLITLAVKFL SDSPAALNLL TEENMKLKSL KELTGEPLYW NDYLSLPFTQ KVITETLRMG NVIIGVMRKA MKDVEIKGYV IPKGWCFLAY
401: LRSVHLDKLY YESPYKFNPW RWQERDMNTS SFSPFGGGQR LCPGLDLARL ETSVFLHHLV TRFRWIAEED TIINFPTVHM KNKLPIWIKR I
101: IVSTDAEVNR AVLQSDSTAF VPFYPKTVRE LMGKSSILLI NGSLHRRFHG LVGSFLKSPL LKAQIVRDMH KFLSESMDLW SEDQPVLLQD VSKTVAFKVL
201: AKALISVEKG EDLEELKREF ENFISGLMSL PINFPGTQLH RSLQAKKNMV KQVERIIEGK IRKTKNKEED DVIAKDVVDV LLKDSSEHLT HNLIANNMID
301: MMIPGHDSVP VLITLAVKFL SDSPAALNLL TEENMKLKSL KELTGEPLYW NDYLSLPFTQ KVITETLRMG NVIIGVMRKA MKDVEIKGYV IPKGWCFLAY
401: LRSVHLDKLY YESPYKFNPW RWQERDMNTS SFSPFGGGQR LCPGLDLARL ETSVFLHHLV TRFRWIAEED TIINFPTVHM KNKLPIWIKR I
Arabidopsis Description
CYP90D1CYP90D1 [Source:UniProtKB/TrEMBL;Acc:A0A178VDZ8]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.