Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
- extracellular 3
- endoplasmic reticulum 5
- vacuole 3
- plasma membrane 3
- golgi 4
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr1P21300_001 | |
| GSMUA_Achr8P18250_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13730.1 | GSMUA_Achr10P... | AT2G01570.1 | 21798944 |
| AT3G13730.1 | GSMUA_Achr1P21300_001 | AT2G01570.1 | 21798944 |
| AT3G13730.1 | GSMUA_Achr8P18250_001 | AT2G01570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P28740_001 | Banana | cytosol | 43.93 | 83.26 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 72.85 | 73.33 |
| GSMUA_Achr7P09630_001 | Banana | endoplasmic reticulum, golgi | 73.29 | 69.89 |
| Os05t0200400-01 | Rice | endoplasmic reticulum, mitochondrion, plastid | 41.94 | 67.38 |
| VIT_09s0002g02080.t01 | Wine grape | endoplasmic reticulum | 67.55 | 64.42 |
| KRH44159 | Soybean | golgi | 66.89 | 63.92 |
| KRH47133 | Soybean | extracellular, golgi | 66.45 | 63.64 |
| Os01t0197100-01 | Rice | endoplasmic reticulum | 68.43 | 63.27 |
| TraesCS3A01G103800.1 | Wheat | plastid | 67.11 | 62.42 |
| TraesCS3D01G106100.1 | Wheat | plastid | 67.11 | 62.17 |
| Zm00001d039453_P001 | Maize | plastid | 68.65 | 61.71 |
| HORVU3Hr1G018860.5 | Barley | endoplasmic reticulum | 67.55 | 61.69 |
| TraesCS3B01G121200.1 | Wheat | plastid | 67.11 | 61.54 |
| EES02301 | Sorghum | endoplasmic reticulum, golgi, plastid | 68.21 | 60.71 |
| Solyc03g121510.2.1 | Tomato | endoplasmic reticulum, golgi | 58.72 | 57.2 |
| Zm00001d037745_P001 | Maize | plasma membrane, plastid | 64.02 | 55.56 |
| EES17857 | Sorghum | plastid | 64.02 | 55.24 |
| Bra021505.1-P | Field mustard | endoplasmic reticulum, golgi | 57.84 | 53.25 |
| CDY51737 | Canola | endoplasmic reticulum, golgi | 57.84 | 53.25 |
| CDX97511 | Canola | extracellular, golgi | 57.4 | 52.95 |
| CDY37485 | Canola | extracellular, golgi | 57.4 | 52.85 |
| AT3G13730.1 | Thale cress | extracellular, golgi | 57.17 | 52.75 |
| Bra027405.1-P | Field mustard | endoplasmic reticulum, golgi | 53.86 | 51.48 |
| CDY23635 | Canola | endoplasmic reticulum, golgi | 33.11 | 43.73 |
| GSMUA_Achr8P00150_001 | Banana | endoplasmic reticulum, golgi | 34.66 | 32.64 |
| GSMUA_Achr3P08890_001 | Banana | endoplasmic reticulum, vacuole | 34.88 | 32.24 |
| GSMUA_Achr5P04260_001 | Banana | endoplasmic reticulum, plasma membrane | 32.45 | 31.01 |
| GSMUA_Achr6P00040_001 | Banana | endoplasmic reticulum | 31.13 | 30.32 |
| GSMUA_Achr2P13610_001 | Banana | endoplasmic reticulum, golgi | 31.13 | 30.32 |
| GSMUA_Achr5P10500_001 | Banana | endoplasmic reticulum, vacuole | 27.37 | 30.17 |
| GSMUA_Achr8P28130_001 | Banana | cytosol | 28.48 | 30.07 |
| GSMUA_Achr4P32900_001 | Banana | endoplasmic reticulum | 31.13 | 29.75 |
| GSMUA_Achr4P10750_001 | Banana | endoplasmic reticulum, plasma membrane | 31.13 | 29.01 |
| GSMUA_Achr8P26350_001 | Banana | endoplasmic reticulum, extracellular | 31.13 | 27.92 |
| GSMUA_Achr8P26330_001 | Banana | endoplasmic reticulum, extracellular | 31.13 | 27.7 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 29.36 | 27.54 |
| GSMUA_Achr4P09180_001 | Banana | endoplasmic reticulum, golgi | 29.58 | 27.35 |
| GSMUA_Achr5P10490_001 | Banana | plasma membrane, vacuole | 28.92 | 27.01 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane | 30.68 | 26.68 |
Protein Annotations
| Gene3D:1.10.630.10 | MapMan:11.3.1.4 | ncoils:Coil | InterPro:Cyt_P450 | InterPro:Cyt_P450_CS | InterPro:Cyt_P450_E_grp-I |
| InterPro:Cyt_P450_sf | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004497 | GO:GO:0005488 | GO:GO:0005506 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0016705 | GO:GO:0020037 | GO:GO:0046872 |
| GO:GO:0055114 | EnsemblPlantsGene:GSMUA_Achr2G16740_001 | EnsemblPlants:GSMUA_Achr2P16740_001 | EnsemblPlants:GSMUA_Achr2T16740_001 | InterPro:IPR036396 | UniProt:M0S8L5 |
| PFAM:PF00067 | PRINTS:PR00463 | ScanProsite:PS00086 | PANTHER:PTHR24286 | PANTHER:PTHR24286:SF30 | SUPFAM:SSF48264 |
| TMHMM:TMhelix | UniParc:UPI00029691DC | SEG:seg | : | : | : |
Description
Cytochrome P450 90D2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G16740_001]
Coordinates
chr2:+:17517754..17520189
Molecular Weight (calculated)
51744.7 Da
IEP (calculated)
9.433
GRAVY (calculated)
-0.155
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKLLIIWLA ASVIVVTVIL CKSRKLKRRT RAGRLPKGAL GWPLIGETLE FVSCAYSPRP ESFMDKRRLV YGKVFKSHIF GSPTIVSTDA EVSRFILQSD
101: ENLQKRVHGL IGAFLKSGHL KSQVTKDMQR YVQETMSNWK DGHLIHLQDE AKLIVFQILV KGLIGLEPGE EMHILKQQFQ EFIAGLMSLP VKLPGSRLYR
201: SLQAMNSSTQ AKKKMVMLIQ RTIQEKRMSE PRCPPRDVVD VLLNDSNDQL PDDLISDNMI DLMIPAEDSV PVLLTLAAKY LSDCPLALQQ LEEENMQLKK
301: SKSLLGETLQ WTDYMSLSFT QDVITETLRM GNIISGIMRK AMKDVEIKGH LIPKGWCVFA YFRSVHLEDD LYEEAYCFNP WRWKGKDTST CGFTPFGGGR
401: RLCPGLDLAR LEASIFLHHL VTGFTWVAEE DQIVNFPTVR MKRRMPIIVR RKN
101: ENLQKRVHGL IGAFLKSGHL KSQVTKDMQR YVQETMSNWK DGHLIHLQDE AKLIVFQILV KGLIGLEPGE EMHILKQQFQ EFIAGLMSLP VKLPGSRLYR
201: SLQAMNSSTQ AKKKMVMLIQ RTIQEKRMSE PRCPPRDVVD VLLNDSNDQL PDDLISDNMI DLMIPAEDSV PVLLTLAAKY LSDCPLALQQ LEEENMQLKK
301: SKSLLGETLQ WTDYMSLSFT QDVITETLRM GNIISGIMRK AMKDVEIKGH LIPKGWCVFA YFRSVHLEDD LYEEAYCFNP WRWKGKDTST CGFTPFGGGR
401: RLCPGLDLAR LEASIFLHHL VTGFTWVAEE DQIVNFPTVR MKRRMPIIVR RKN
001: MDTSSSLLFF SFFFFIIIVI FNKINGLRSS PASKKKLNDH HVTSQSHGPK FPHGSLGWPV IGETIEFVSS AYSDRPESFM DKRRLMYGRV FKSHIFGTAT
101: IVSTDAEVNR AVLQSDSTAF VPFYPKTVRE LMGKSSILLI NGSLHRRFHG LVGSFLKSPL LKAQIVRDMH KFLSESMDLW SEDQPVLLQD VSKTVAFKVL
201: AKALISVEKG EDLEELKREF ENFISGLMSL PINFPGTQLH RSLQAKKNMV KQVERIIEGK IRKTKNKEED DVIAKDVVDV LLKDSSEHLT HNLIANNMID
301: MMIPGHDSVP VLITLAVKFL SDSPAALNLL TEENMKLKSL KELTGEPLYW NDYLSLPFTQ KVITETLRMG NVIIGVMRKA MKDVEIKGYV IPKGWCFLAY
401: LRSVHLDKLY YESPYKFNPW RWQERDMNTS SFSPFGGGQR LCPGLDLARL ETSVFLHHLV TRFRWIAEED TIINFPTVHM KNKLPIWIKR I
101: IVSTDAEVNR AVLQSDSTAF VPFYPKTVRE LMGKSSILLI NGSLHRRFHG LVGSFLKSPL LKAQIVRDMH KFLSESMDLW SEDQPVLLQD VSKTVAFKVL
201: AKALISVEKG EDLEELKREF ENFISGLMSL PINFPGTQLH RSLQAKKNMV KQVERIIEGK IRKTKNKEED DVIAKDVVDV LLKDSSEHLT HNLIANNMID
301: MMIPGHDSVP VLITLAVKFL SDSPAALNLL TEENMKLKSL KELTGEPLYW NDYLSLPFTQ KVITETLRMG NVIIGVMRKA MKDVEIKGYV IPKGWCFLAY
401: LRSVHLDKLY YESPYKFNPW RWQERDMNTS SFSPFGGGQR LCPGLDLARL ETSVFLHHLV TRFRWIAEED TIINFPTVHM KNKLPIWIKR I
Arabidopsis Description
CYP90D1CYP90D1 [Source:UniProtKB/TrEMBL;Acc:A0A178VDZ8]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.