Factsheet for TraesCS3A01G103800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G271000.1
TraesCS4A01G466700.1
TraesCS4B01G043100.1
TraesCS4D01G040400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13730.1	TraesCS4A01G271000.1	AT2G01570.1	21798944
AT3G13730.1	TraesCS4A01G466700.1	AT2G01570.1	21798944
AT3G13730.1	TraesCS4B01G043100.1	AT2G01570.1	21798944
AT3G13730.1	TraesCS4D01G040400.1	AT2G01570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G106100.1	Wheat	plastid	97.54	97.14
TraesCS3B01G121200.1	Wheat	plastid	97.33	95.95
HORVU3Hr1G018860.5	Barley	endoplasmic reticulum	94.25	92.54
Os01t0197100-01	Rice	endoplasmic reticulum	80.9	80.41
EES02301	Sorghum	endoplasmic reticulum, golgi, plastid	82.75	79.17
Zm00001d039453_P001	Maize	plastid	81.52	78.77
GSMUA_Achr9P28740_001	Banana	cytosol	37.17	75.73
GSMUA_Achr10P...	Banana	endoplasmic reticulum	62.83	68.0
GSMUA_Achr7P09630_001	Banana	endoplasmic reticulum, golgi	65.91	67.58
GSMUA_Achr2P16740_001	Banana	endoplasmic reticulum, golgi, plastid	62.42	67.11
KRH47133	Soybean	extracellular, golgi	59.75	61.52
KRH44159	Soybean	golgi	59.34	60.97
VIT_09s0002g02080.t01	Wine grape	endoplasmic reticulum	59.34	60.84
Solyc03g121510.2.1	Tomato	endoplasmic reticulum, golgi	55.24	57.85
CDY37485	Canola	extracellular, golgi	55.85	55.28
Bra021505.1-P	Field mustard	endoplasmic reticulum, golgi	55.65	55.08
CDY51737	Canola	endoplasmic reticulum, golgi	55.65	55.08
AT3G13730.1	Thale cress	extracellular, golgi	55.44	54.99
CDX97511	Canola	extracellular, golgi	55.44	54.99
Bra027405.1-P	Field mustard	endoplasmic reticulum, golgi	52.57	54.01
CDY23635	Canola	endoplasmic reticulum, golgi	32.65	46.36
TraesCS5A01G131400.1	Wheat	endoplasmic reticulum, golgi	36.34	35.47
TraesCS2A01G331800.1	Wheat	endoplasmic reticulum, golgi	32.44	33.19
TraesCS2A01G013400.1	Wheat	endoplasmic reticulum	32.03	33.12
TraesCS2A01G013500.1	Wheat	endoplasmic reticulum, golgi	31.62	32.7
TraesCS3A01G519000.2	Wheat	endoplasmic reticulum	33.26	32.4
TraesCS2A01G400400.1	Wheat	endoplasmic reticulum	31.21	31.21
TraesCS6A01G255900.1	Wheat	endoplasmic reticulum	30.18	31.08
TraesCS5A01G307700.1	Wheat	endoplasmic reticulum, plasma membrane	31.01	30.82
TraesCS2A01G400500.1	Wheat	endoplasmic reticulum	30.39	30.71
TraesCS2A01G367800.1	Wheat	extracellular, plasma membrane	30.6	30.35
TraesCS5A01G556900.1	Wheat	extracellular, golgi, plasma membrane	29.77	30.15
TraesCS2A01G400600.1	Wheat	cytosol, endoplasmic reticulum, vacuole	31.21	29.92
TraesCS4A01G354800.1	Wheat	extracellular, plasma membrane	24.02	29.55
TraesCS4A01G078000.1	Wheat	endoplasmic reticulum, golgi	33.68	29.18
TraesCS2A01G013000.1	Wheat	endoplasmic reticulum	30.18	29.17
TraesCS5A01G459800.1	Wheat	plasma membrane	26.08	28.86
TraesCS2A01G013200.2	Wheat	endoplasmic reticulum	29.36	28.21
TraesCS5A01G544600.1	Wheat	plasma membrane	16.63	24.55

Protein Annotations

Gene3D:1.10.630.10	MapMan:11.3.1.4	ncoils:Coil	InterPro:Cyt_P450	InterPro:Cyt_P450_CS	InterPro:Cyt_P450_E_grp-I
InterPro:Cyt_P450_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0006629	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791
GO:GO:0009908	GO:GO:0016132	GO:GO:0016705	GO:GO:0016709	GO:GO:0020037	GO:GO:0048366
GO:GO:0048441	GO:GO:0048443	GO:GO:0055114	InterPro:IPR036396	PFAM:PF00067	PRINTS:PR00463
ScanProsite:PS00086	PANTHER:PTHR24286	PANTHER:PTHR24286:SF98	SUPFAM:SSF48264	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3A01G103800
EnsemblPlants:TraesCS3A01G103800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:67158670..67165293

Molecular Weight (calculated)

54828.2 Da

IEP (calculated)

10.247

GRAVY (calculated)

-0.064

Length

487 amino acids

Sequence
(BLAST)

001: MSVSWPAPST CAAAGALLAA AWLLCFRLLP AVARPRRRAM KTGAQLPPGS FGWPVVGETL DFVSCSYSPR PEAFVDKRRL RYGSAVFRSH LFGSATVVTA
101: DAEVNRFVLQ SDARSFVPWY PRSLTELMGK SSILVINGGL QRRVHGLVGA FFKSPQLKAQ VTADMQRLLA PALASWRHQG PGARLRIQDH AKTIVFQILV
201: RGLIGLEAGP EMQQLKQQFQ EFIVGLMSLP IKLPGTRLYR SLQAKKRMAR VIQRIIQEKR RRRALDGPPR DAIDVLMGAG SEELTDELIS DNMIDFMIPA
301: EDSVPVLITL AVKFLSECPL ALQQLEEENM ELKMRKTDLG ETLQWTDYMS LSFTQHVITE TLRVGNIISG IMRKAVRDVE VKGHLIPKGW RVFMYFRSVH
401: LDDMLYEDPC KFNPWRWKEK DMSTSSFTPF GGGLRLCPGL DLARLEASIF LHHLVTSFRW VAEEDHIVNF PTVRLKGGMP IRVTAKD

Best Arabidopsis Sequence Match ( AT3G13730.1 )
(BLAST)

001: MDTSSSLLFF SFFFFIIIVI FNKINGLRSS PASKKKLNDH HVTSQSHGPK FPHGSLGWPV IGETIEFVSS AYSDRPESFM DKRRLMYGRV FKSHIFGTAT
101: IVSTDAEVNR AVLQSDSTAF VPFYPKTVRE LMGKSSILLI NGSLHRRFHG LVGSFLKSPL LKAQIVRDMH KFLSESMDLW SEDQPVLLQD VSKTVAFKVL
201: AKALISVEKG EDLEELKREF ENFISGLMSL PINFPGTQLH RSLQAKKNMV KQVERIIEGK IRKTKNKEED DVIAKDVVDV LLKDSSEHLT HNLIANNMID
301: MMIPGHDSVP VLITLAVKFL SDSPAALNLL TEENMKLKSL KELTGEPLYW NDYLSLPFTQ KVITETLRMG NVIIGVMRKA MKDVEIKGYV IPKGWCFLAY
401: LRSVHLDKLY YESPYKFNPW RWQERDMNTS SFSPFGGGQR LCPGLDLARL ETSVFLHHLV TRFRWIAEED TIINFPTVHM KNKLPIWIKR I

Arabidopsis Description

CYP90D1CYP90D1 [Source:UniProtKB/TrEMBL;Acc:A0A178VDZ8]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.