CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68502	Canola	extracellular, golgi	13.07	7.34
CDX96894	Canola	extracellular, golgi	20.1	6.49
CDY52948	Canola	golgi, mitochondrion	18.09	6.45
CDY46554	Canola	golgi, mitochondrion	17.09	6.07
CDX90221	Canola	golgi	17.59	5.78
CDY35266	Canola	golgi	17.59	5.74
CDY22853	Canola	golgi, mitochondrion, plastid	16.08	5.7
CDY55669	Canola	golgi, mitochondrion, plastid	16.08	5.7
CDY19581	Canola	golgi, mitochondrion, plastid	16.58	5.7
CDX99872	Canola	golgi, plastid	17.59	5.67
CDY50074	Canola	golgi, mitochondrion, plastid	16.08	5.56
CDY26300	Canola	golgi	17.09	5.51
CDY27620	Canola	endoplasmic reticulum, golgi, vacuole	15.58	5.43
CDX82213	Canola	golgi, mitochondrion	14.57	5.17
CDY32409	Canola	golgi, mitochondrion	14.57	5.17
CDX84922	Canola	cytosol	15.08	4.62

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6hp_glycosidase-like_sf	GO:A0A078FP15
UniProt:A0A078FP15	EnsemblPlants:CDY14886	ProteinID:CDY14886	ProteinID:CDY14886.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00084786001	InterPro:Glyco_hydro_47	InterPro:IPR012341	PFAM:PF01532	PANTHER:PTHR11742	PANTHER:PTHR11742:SF41
SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases	UniPathway:UPA00378	UniParc:UPI0004EED20D	SEG:seg	:

Description

BnaA02g22280DBnaA02g22280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FP15]

Coordinates

chrLK032048:-:137981..138959

Molecular Weight (calculated)

22439.2 Da

IEP (calculated)

4.728

GRAVY (calculated)

-0.528

Length

199 amino acids

Sequence
(BLAST)

001: MESFFLAETV KYLWLLFDLA VDSDNLVDNG PYKYIFSTEG HLLPLTPQIS LAREHCSYFG GYCPRNATKF EQSNDDHQVP EIELGHHSNI YPYHESFPVT
101: GLIKGLCPRL SHAQKYGLSY VLPEKTERED VKRPKPVITS RSIVLVSDQT VEKRPQEEGF TSESEPIMSI SGGGSSSDQT GQELTLLESE TDDKRVYSS

Best Arabidopsis Sequence Match ( AT5G43710.1 )
(BLAST)

001: MDSNFKWLLF AILISLTFSG FVLHHGVLAE SVKPDEAKQL RDEVRGMFYH AFDGYMNNAF PLDELRPLSC QGEDTLGGYA LTLIDSLDTL ALLGDRERFT
101: SSVEWIGKNL QFNINKTVSV FETTIRVLGG LLSAHLIASD YATGMRIPSY NNELLVLAEN LARRMLPAFD TPTGIPFGSV NLMYGVDKHE SKITSTAGGG
201: TLSLEFGVLS RLTNDPVFEQ VAKNAVRGLW ARRSNLDLVG AHINVFTGEW TQKDAGIGTS IDSFYEYLLK AYILFGDEEY LYIFQEAYRS AMQYLHKDPW
301: YVEVNMDSAA IVWPVFNSLQ AFWPGLQVLA GDVDPAIRTH TAFFSVWKRY GFTPEGFNLA TLSVQYGQKS YPLRPELIES TYWLYKATRD PRYLDAGRDF
401: VASLQYGAKC PCGYCHITDV ELHKQEDHME SFFLAETVKY LWLLFDLAVD SDNLVDNGPY KYIFSTEGHL LPITPQISLA REHCSYFGGY CPSNSTKLEQ
501: EVLGEDSSND DHSNDYPYHE SFPVTGLIKG LCPGLTHAQK YGFSYVLPEK TDREDVNQPK PVVTSSSIVL ISDQTVEKRP QEEEGFTSQS EPIMTISGGS
601: SNDQTGQELT LLESETDDQR SYSS

Arabidopsis Description

MNS4Alpha-mannosidase I MNS4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG93]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.