CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid

Predictor Summary:

plastid 3
mitochondrion 4
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	CDX90725	AT4G09570.1	19130088
AT3G21160.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19581	Canola	golgi, mitochondrion, plastid	94.1	93.61
AT3G21160.1	Thale cress	golgi	83.16	83.74
CDX82213	Canola	golgi, mitochondrion	80.38	82.53
CDY32409	Canola	golgi, mitochondrion	80.03	82.17
CDY22853	Canola	golgi, mitochondrion, plastid	76.56	78.61
CDY55669	Canola	golgi, mitochondrion, plastid	75.87	77.9
KRH58075	Soybean	extracellular	12.67	77.66
CDY46554	Canola	golgi, mitochondrion	74.48	76.61
CDY52948	Canola	golgi, mitochondrion	73.61	75.99
PGSC0003DMT400023755	Potato	cytosol	34.2	75.19
VIT_09s0054g00230.t01	Wine grape	cytosol	44.1	74.05
VIT_09s0054g00310.t01	Wine grape	cytosol	11.46	71.74
VIT_09s0054g00370.t01	Wine grape	golgi, mitochondrion	71.01	71.13
Solyc03g123900.2.1	Tomato	extracellular, nucleus	70.66	70.29
KRH47289	Soybean	endoplasmic reticulum	69.62	69.62
KRH44626	Soybean	mitochondrion	69.79	69.55
Zm00001d002388_P003	Maize	golgi, mitochondrion, plastid	66.67	67.96
EES12812	Sorghum	golgi, mitochondrion, plastid	66.32	67.73
Zm00001d026257_P003	Maize	golgi, mitochondrion	66.32	67.73
Solyc06g063260.2.1	Tomato	golgi, mitochondrion	66.32	67.61
GSMUA_Achr2P04510_001	Banana	golgi, mitochondrion	68.06	67.47
Os04t0606400-01	Rice	golgi	66.15	66.61
VIT_11s0052g00140.t01	Wine grape	golgi, mitochondrion	57.64	66.14
Zm00001d031739_P001	Maize	cytosol	13.54	65.0
GSMUA_Achr4P12680_001	Banana	golgi	51.74	64.64
Zm00001d025428_P002	Maize	cytosol	12.5	64.29
KRH19110	Soybean	cytosol	41.49	63.9
HORVU2Hr1G100750.2	Barley	golgi, mitochondrion, plastid	65.62	63.11
TraesCS2A01G432100.2	Wheat	golgi, mitochondrion, plastid	65.45	62.94
TraesCS2D01G430000.2	Wheat	golgi	65.45	62.94
TraesCS2B01G453500.2	Wheat	golgi, mitochondrion, plastid	65.1	62.6
KRH02771	Soybean	golgi, plastid	61.63	61.1
Zm00001d019006_P001	Maize	cytosol	23.61	60.71
Zm00001d003736_P001	Maize	plastid	31.94	43.09
CDX99872	Canola	golgi, plastid	36.63	34.2
CDY26300	Canola	golgi	36.46	34.04
CDX90221	Canola	golgi	35.59	33.83
CDY35266	Canola	golgi	35.59	33.61
CDY68502	Canola	extracellular, golgi	17.88	29.1
CDY27620	Canola	endoplasmic reticulum, golgi, vacuole	23.44	23.64
CDX96894	Canola	extracellular, golgi	23.61	22.08
CDX84922	Canola	cytosol	23.61	20.92
CDY14886	Canola	golgi	5.56	16.08

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:18.1.1.6.3	InterPro:6hp_glycosidase-like_sf	GO:A0A078IL33
UniProt:A0A078IL33	EnsemblPlants:CDY50074	ProteinID:CDY50074	ProteinID:CDY50074.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSBRNA2T00095846001
InterPro:Glyco_hydro_47	InterPro:IPR012341	PFAM:PF01532	PRINTS:PR00747	PANTHER:PTHR11742	PANTHER:PTHR11742:SF42
SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases	TMHMM:TMhelix	UniPathway:UPA00378	UniParc:UPI0004EE7C9F	SEG:seg

Description

BnaC05g30830Dalpha-1,2-Mannosidase [Source:UniProtKB/TrEMBL;Acc:A0A078IL33]

Coordinates

chrLK032878:+:69286..73261

Molecular Weight (calculated)

65452.8 Da

IEP (calculated)

5.560

GRAVY (calculated)

-0.309

Length

576 amino acids

Sequence
(BLAST)

001: MARSKAVVSG SHHGIWKYFN PAYYLRRPRR LALLFFLFLS VSMVLWDRHS LSRDYQLEVS KLNEEVMRLQ LLLEDVKSVV TEDVSVNSTL MDVQEDPLDA
101: QRMQRVKEAM IHAWSSYEKY AWGQDELQPQ TKDGVDSFGS LGATMIDALD TLYIMGLDEQ FQKAREWVAT SLDFDKDYDA SMFETTIRVV GGLLSAYDLS
201: GDKLFLDKAK DIADRLLPAW DTPSGIPYNI INLRHGNAHN PTWAGGDSIL ADSGTEQLEF IALSQRTGDP KYQQKVEKVI SVLNKNFPAD GLLPIYISAE
301: TANPSHSTIT FGAMGDSFYE YLLKVWVFGS KTLSVKHYRD MWEKSMNGLV SLVKKSTPSS FTYICEKSGT SLSDKMDELA CFAPGMLALG ASGYNDPAEA
401: KKFLTLAEEL AWTCYNFYES TPTKLAGENY FFNSGSDMSV GTSWNILRPE TVESLFYLWR LTGNKTYQDW GWNIFEAFEK NSRIESGYVG LKDVNTGVKD
501: NKMQSFFLAE TLKYLYLLFS PTTVIPLDEW VFNTEAHPLK IVPWNDQVNL GQSTAVQQRK PTIRLRQRRI GRMTNK

Best Arabidopsis Sequence Match ( AT3G21160.1 )
(BLAST)

001: MARNKLVSGS HGIWKYFNPA FYLRRPRRLA LLIILFVSVS MVVWDRQSLS RDYQFEVSKL NEEVLRLQQM LEEIKSVTED VSVNSLKDVQ EDPVDAQRMQ
101: RVKEAMVHAW SSYEKYAWGQ DELQPQTKDG VDSFGGLGAT MIDALDTLYI MGLDEQFQKA REWVASSLDF DKDYAASMFE TTIRVVGGLL SAYDLSGDKI
201: FLEKAMDIAD RLLPAWDTQS GIPYNIINLK HGNAHNPTWA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVISVLN KNFPADGLLP IYINPDTANP
301: SQSTITFGAM GDSFYEYLLK VWVFGNKTSA VKHYRDMWEK SMNGLLSLVK KSTPLSFTYI CEKSGNSLID KMDELACFAP GMLALGASGY SDPAEGKKFL
401: TLAEELAWTC YNFYQSTPTK LAGENYFFNS GSDMSVGTSW NILRPETVES LFYLWRLTGN KTYQEWGWNI FEAFEKNSRI ESGYVGLKDV NTGVKDNKMQ
501: SFFLAETLKY LYLLFSPTTV IPLDEWVFNT EAHPLKIKSR NDQVNLKQSN KVLLRKPAFR IRQRHYGRIT KK

Arabidopsis Description

MNS2Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H116]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.